Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00690 and PGA1_262p00700 are separated by 1 nucleotides PGA1_262p00700 and PGA1_262p00710 overlap by 4 nucleotides PGA1_262p00710 and PGA1_262p00720 overlap by 4 nucleotides PGA1_262p00720 and PGA1_262p00730 are separated by 73 nucleotides
PGA1_262p00690: PGA1_262p00690 - stressosome protein rsbRA-like protein, at 79,498 to 80,373
_262p00690
PGA1_262p00700: PGA1_262p00700 - stressosome protein rsbS-like protein, at 80,375 to 80,737
_262p00700
PGA1_262p00710: PGA1_262p00710 - serine/threonine-protein kinase RsbT-like protein, at 80,734 to 81,141
_262p00710
PGA1_262p00720: PGA1_262p00720 - serine/threonine-protein kinase RsbT-like protein, at 81,138 to 82,151
_262p00720
PGA1_262p00730: PGA1_262p00730 - putative signal transduction histidine kinase, at 82,225 to 83,316
_262p00730
Position (kb) 81
82
83 Strain fitness (log2 ratio) -1
0
1 at 80.239 kb on - strand, within PGA1_262p00690 at 80.334 kb on - strand at 80.350 kb on - strand at 80.600 kb on + strand, within PGA1_262p00700 at 80.600 kb on + strand, within PGA1_262p00700 at 80.674 kb on + strand, within PGA1_262p00700 at 80.957 kb on + strand, within PGA1_262p00710 at 80.959 kb on + strand, within PGA1_262p00710 at 81.138 kb on - strand at 81.155 kb on - strand at 81.238 kb on - strand at 81.376 kb on + strand, within PGA1_262p00720 at 81.437 kb on + strand, within PGA1_262p00720 at 81.497 kb on + strand, within PGA1_262p00720 at 81.586 kb on - strand, within PGA1_262p00720 at 81.639 kb on + strand, within PGA1_262p00720 at 81.657 kb on - strand, within PGA1_262p00720 at 81.732 kb on - strand, within PGA1_262p00720 at 81.822 kb on - strand, within PGA1_262p00720 at 82.465 kb on - strand, within PGA1_262p00730 at 83.008 kb on + strand, within PGA1_262p00730 at 83.057 kb on + strand, within PGA1_262p00730 at 83.066 kb on + strand, within PGA1_262p00730 at 83.066 kb on + strand, within PGA1_262p00730
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 80,239 - PGA1_262p00690 0.85 +0.7 80,334 - +0.1 80,350 - +0.2 80,600 + PGA1_262p00700 0.62 -0.3 80,600 + PGA1_262p00700 0.62 -0.6 80,674 + PGA1_262p00700 0.82 +1.1 80,957 + PGA1_262p00710 0.55 -0.5 80,959 + PGA1_262p00710 0.55 +0.0 81,138 - -1.0 81,155 - -0.7 81,238 - +1.0 81,376 + PGA1_262p00720 0.23 +0.1 81,437 + PGA1_262p00720 0.29 +0.5 81,497 + PGA1_262p00720 0.35 +1.0 81,586 - PGA1_262p00720 0.44 +0.4 81,639 + PGA1_262p00720 0.49 +0.9 81,657 - PGA1_262p00720 0.51 +0.5 81,732 - PGA1_262p00720 0.59 -0.6 81,822 - PGA1_262p00720 0.67 +0.5 82,465 - PGA1_262p00730 0.22 +0.4 83,008 + PGA1_262p00730 0.72 -0.5 83,057 + PGA1_262p00730 0.76 +0.4 83,066 + PGA1_262p00730 0.77 +0.4 83,066 + PGA1_262p00730 0.77 -0.4
Or see this region's nucleotide sequence