Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c36200

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. D-Cycloserine 0.0625 mg/ml
3,787,542	-		PGA1_c36170	0.89	+0.2
3,787,593	-				+0.3
3,787,617	+				-0.9
3,787,650	+				-0.0
3,787,711	+				-0.1
3,787,719	-				+0.1
3,787,719	-				-0.4
3,787,719	-				-1.1
3,787,732	-				+0.2
3,787,746	-				-1.2
3,787,746	-				-0.4
3,787,746	-				+0.2
3,787,767	-		PGA1_c36180	0.12	-0.3
3,787,767	-		PGA1_c36180	0.12	-1.0
3,787,767	-		PGA1_c36180	0.12	+0.5
3,787,767	-		PGA1_c36180	0.12	+0.3
3,787,792	+		PGA1_c36180	0.20	+0.1
3,787,828	+		PGA1_c36180	0.31	+0.7
3,787,870	+		PGA1_c36180	0.45	+0.1
3,787,870	+		PGA1_c36180	0.45	+0.6
3,787,877	+		PGA1_c36180	0.47	+0.3
3,787,895	-		PGA1_c36180	0.52	-0.6
3,787,895	-		PGA1_c36180	0.52	+2.4
3,787,921	-		PGA1_c36180	0.60	-0.8
3,787,950	+		PGA1_c36180	0.69	-0.7
3,787,950	+		PGA1_c36180	0.69	+0.2
3,787,958	-		PGA1_c36180	0.72	-0.4
3,787,958	-		PGA1_c36180	0.72	-0.6
3,788,004	+		PGA1_c36180	0.86	+0.1
3,788,004	+		PGA1_c36180	0.86	-1.6
3,788,004	+		PGA1_c36180	0.86	+0.3
3,788,012	-		PGA1_c36180	0.89	-0.8
3,788,012	-		PGA1_c36180	0.89	+0.7
3,788,012	-		PGA1_c36180	0.89	-0.1
3,788,012	-		PGA1_c36180	0.89	+0.7
3,788,014	+		PGA1_c36180	0.89	+0.0
3,788,022	-				+0.1
3,788,045	+				+1.2
3,788,081	+				+0.1
3,788,081	+				-0.1
3,788,102	+		PGA1_c36190	0.14	-0.9
3,788,132	+		PGA1_c36190	0.21	-1.1
3,788,138	+		PGA1_c36190	0.22	-1.2
3,788,148	-		PGA1_c36190	0.24	-0.0
3,788,195	+		PGA1_c36190	0.35	-1.0
3,788,203	+		PGA1_c36190	0.37	-0.1
3,788,203	+		PGA1_c36190	0.37	-0.7
3,788,203	+		PGA1_c36190	0.37	-0.6
3,788,203	-		PGA1_c36190	0.37	-0.5
3,788,211	-		PGA1_c36190	0.39	-0.2
3,788,211	-		PGA1_c36190	0.39	-1.0
3,788,211	-		PGA1_c36190	0.39	-0.5
3,788,228	+		PGA1_c36190	0.43	-0.2
3,788,228	+		PGA1_c36190	0.43	-0.7
3,788,228	+		PGA1_c36190	0.43	-0.0
3,788,252	+		PGA1_c36190	0.48	+0.1
3,788,252	+		PGA1_c36190	0.48	+0.4
3,788,257	-		PGA1_c36190	0.50	-0.7
3,788,337	-		PGA1_c36190	0.68	+0.6
3,788,350	-		PGA1_c36190	0.71	+0.9
3,788,389	+		PGA1_c36190	0.80	-0.0
3,788,399	+		PGA1_c36190	0.83	+0.9
3,788,399	+		PGA1_c36190	0.83	+0.3
3,788,399	+		PGA1_c36190	0.83	-0.4
3,788,399	+		PGA1_c36190	0.83	-0.7
3,788,399	+		PGA1_c36190	0.83	+0.2
3,788,399	+		PGA1_c36190	0.83	+0.5
3,788,399	+		PGA1_c36190	0.83	+0.3
3,788,399	+		PGA1_c36190	0.83	-1.4
3,788,399	+		PGA1_c36190	0.83	-1.4
3,788,399	+		PGA1_c36190	0.83	+0.3
3,788,399	+		PGA1_c36190	0.83	+0.6
3,788,399	+		PGA1_c36190	0.83	+0.3
3,788,399	+		PGA1_c36190	0.83	+1.2
3,788,399	+		PGA1_c36190	0.83	+0.1
3,788,399	+		PGA1_c36190	0.83	+1.0
3,788,399	+		PGA1_c36190	0.83	+0.1
3,788,399	+		PGA1_c36190	0.83	-0.8
3,788,407	-		PGA1_c36190	0.85	+0.5
3,788,407	-		PGA1_c36190	0.85	+0.9
3,788,407	-		PGA1_c36190	0.85	+0.1
3,788,407	-		PGA1_c36190	0.85	+0.7
3,788,407	-		PGA1_c36190	0.85	+0.2
3,788,407	-		PGA1_c36190	0.85	-0.1
3,788,417	-		PGA1_c36190	0.87	+0.6
3,788,417	-		PGA1_c36190	0.87	+0.1
3,788,435	+				+0.1
3,788,445	+				-1.2
3,788,445	+				-0.1
3,788,485	-				-0.1
3,788,522	+				+0.9
3,788,527	+				+0.8
3,788,527	+				-0.6
3,788,530	-				-1.5
3,788,530	-				+0.7
3,788,532	+				-0.8
3,788,535	-				-1.8
3,788,576	+		PGA1_c36200	0.12	+1.2
3,788,583	+		PGA1_c36200	0.15	+0.6
3,788,585	+		PGA1_c36200	0.15	+1.1
3,788,585	+		PGA1_c36200	0.15	-0.0
3,788,585	+		PGA1_c36200	0.15	+0.4
3,788,595	+		PGA1_c36200	0.18	+0.2
3,788,602	+		PGA1_c36200	0.21	+0.7
3,788,613	-		PGA1_c36200	0.24	-0.9
3,788,659	+		PGA1_c36200	0.39	-0.4
3,788,677	+		PGA1_c36200	0.44	+0.3
3,788,677	+		PGA1_c36200	0.44	+0.4
3,788,677	+		PGA1_c36200	0.44	-0.8
3,788,677	+		PGA1_c36200	0.44	-1.3
3,788,685	-		PGA1_c36200	0.47	+0.5
3,788,685	-		PGA1_c36200	0.47	-0.1
3,788,687	+		PGA1_c36200	0.48	-0.4
3,788,715	-		PGA1_c36200	0.57	+1.3
3,788,817	+		PGA1_c36200	0.89	+0.9
3,788,820	+				-1.3
3,788,820	+				-0.6
3,788,820	+				+0.8
3,788,864	+				-0.2
3,788,872	-				+0.4
3,788,872	-				-1.2
3,788,872	-				+0.1
3,788,872	-				+0.7
3,788,872	-				+0.1
3,788,872	-				-0.6
3,788,872	-				+0.6
3,788,872	-				-0.0
3,788,872	-				+1.2
3,788,886	+				+0.6
3,788,886	+				-0.3
3,788,886	+				+1.6
3,788,886	+				+0.8
3,788,886	+				-0.4
3,788,886	+				-1.1
3,788,894	-				+0.1
3,788,894	-				-0.7
3,788,894	-				+1.9
3,788,894	-				+0.2
3,788,894	-				+0.4
3,788,965	+				-0.2
3,788,970	+				+0.6
3,788,978	-				-0.2
3,788,978	-				+1.0
3,788,998	-				+0.7
3,789,023	+		PGA1_c36210	0.11	-0.2
3,789,024	+		PGA1_c36210	0.11	+0.9
3,789,114	+		PGA1_c36210	0.20	-0.6
3,789,122	-		PGA1_c36210	0.21	-1.4
3,789,169	+		PGA1_c36210	0.26	+0.9
3,789,171	-		PGA1_c36210	0.26	+0.1
3,789,180	+		PGA1_c36210	0.27	+0.4
3,789,180	+		PGA1_c36210	0.27	-0.1
3,789,180	+		PGA1_c36210	0.27	+0.1
3,789,180	+		PGA1_c36210	0.27	-0.4
3,789,185	+		PGA1_c36210	0.27	+0.0
3,789,188	-		PGA1_c36210	0.27	+1.0
3,789,188	-		PGA1_c36210	0.27	-0.7
3,789,188	-		PGA1_c36210	0.27	+0.6
3,789,231	-		PGA1_c36210	0.32	-2.9
3,789,246	-		PGA1_c36210	0.33	-0.1
3,789,249	+		PGA1_c36210	0.34	-0.5
3,789,315	+		PGA1_c36210	0.40	-0.4
3,789,315	+		PGA1_c36210	0.40	+0.8
3,789,315	+		PGA1_c36210	0.40	-0.0
3,789,323	-		PGA1_c36210	0.41	-0.2
3,789,357	+		PGA1_c36210	0.44	+1.1
3,789,367	-		PGA1_c36210	0.45	-0.1
3,789,376	+		PGA1_c36210	0.46	-0.7
3,789,383	+		PGA1_c36210	0.47	+1.0
3,789,384	-		PGA1_c36210	0.47	-0.3
3,789,388	+		PGA1_c36210	0.47	+0.1
3,789,389	-		PGA1_c36210	0.48	-0.1
3,789,398	+		PGA1_c36210	0.48	-0.6
3,789,417	+		PGA1_c36210	0.50	-0.6
3,789,425	-		PGA1_c36210	0.51	+0.1
3,789,430	-		PGA1_c36210	0.52	-0.2
3,789,479	+		PGA1_c36210	0.56	-0.1
3,789,529	+		PGA1_c36210	0.61	+1.4
3,789,529	+		PGA1_c36210	0.61	+0.2
3,789,529	-		PGA1_c36210	0.61	-0.6
3,789,537	-		PGA1_c36210	0.62	-1.0
3,789,541	+		PGA1_c36210	0.63	+1.0
3,789,549	-		PGA1_c36210	0.63	-0.5
3,789,581	+		PGA1_c36210	0.67	-0.8
3,789,589	-		PGA1_c36210	0.67	+1.1
3,789,610	+		PGA1_c36210	0.70	-0.8
3,789,610	+		PGA1_c36210	0.70	-0.3
3,789,628	+		PGA1_c36210	0.71	+0.8
3,789,631	-		PGA1_c36210	0.72	-1.4
3,789,672	-		PGA1_c36210	0.76	-0.3
3,789,676	+		PGA1_c36210	0.76	-0.2
3,789,676	+		PGA1_c36210	0.76	+0.6
3,789,684	-		PGA1_c36210	0.77	-0.2
3,789,684	-		PGA1_c36210	0.77	-0.4
3,789,684	-		PGA1_c36210	0.77	-0.9
3,789,684	-		PGA1_c36210	0.77	+0.8
3,789,689	-		PGA1_c36210	0.77	+0.8
3,789,695	+		PGA1_c36210	0.78	-0.0
3,789,703	-		PGA1_c36210	0.79	-0.7
3,789,742	+		PGA1_c36210	0.83	-0.3
3,789,783	-		PGA1_c36210	0.87	+0.6
3,789,788	+		PGA1_c36210	0.87	-1.0
3,789,799	+		PGA1_c36210	0.88	-0.1
3,789,805	-		PGA1_c36210	0.89	+1.1
3,789,822	-				+0.1
3,789,828	-				-0.5
3,789,839	+				+0.3