Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29910

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c29890 and PGA1_c29900 are separated by 205 nucleotidesPGA1_c29900 and PGA1_c29910 are separated by 29 nucleotidesPGA1_c29910 and PGA1_c29920 are separated by 215 nucleotides PGA1_c29890: PGA1_c29890 - histidyl-tRNA synthetase HisS, at 3,125,223 to 3,126,710 _c29890 PGA1_c29900: PGA1_c29900 - protein slyX-like protein, at 3,126,916 to 3,127,110 _c29900 PGA1_c29910: PGA1_c29910 - lead, cadmium, zinc and mercury-transporting ATPase, at 3,127,140 to 3,129,320 _c29910 PGA1_c29920: PGA1_c29920 - alpha-methylacyl-CoA racemase, at 3,129,536 to 3,130,636 _c29920 Position (kb) 3127 3128 3129 3130Strain fitness (log2 ratio) -3 -2 -1 0 1at 3126.791 kb on + strandat 3126.811 kb on - strandat 3126.813 kb on + strandat 3126.821 kb on - strandat 3126.836 kb on + strandat 3126.843 kb on + strandat 3126.851 kb on - strandat 3126.868 kb on - strandat 3126.868 kb on - strandat 3126.889 kb on - strandat 3126.894 kb on + strandat 3126.899 kb on + strandat 3126.899 kb on + strandat 3126.902 kb on - strandat 3126.902 kb on - strandat 3126.907 kb on - strandat 3126.907 kb on - strandat 3126.907 kb on - strandat 3126.938 kb on + strand, within PGA1_c29900at 3126.956 kb on + strand, within PGA1_c29900at 3127.046 kb on - strand, within PGA1_c29900at 3127.046 kb on - strand, within PGA1_c29900at 3127.112 kb on - strandat 3127.263 kb on - strandat 3127.282 kb on + strandat 3127.283 kb on + strandat 3127.355 kb on - strandat 3127.360 kb on - strand, within PGA1_c29910at 3127.435 kb on + strand, within PGA1_c29910at 3127.443 kb on - strand, within PGA1_c29910at 3127.443 kb on - strand, within PGA1_c29910at 3127.469 kb on + strand, within PGA1_c29910at 3127.512 kb on - strand, within PGA1_c29910at 3127.513 kb on + strand, within PGA1_c29910at 3127.531 kb on + strand, within PGA1_c29910at 3127.533 kb on - strand, within PGA1_c29910at 3127.595 kb on - strand, within PGA1_c29910at 3127.682 kb on + strand, within PGA1_c29910at 3127.705 kb on + strand, within PGA1_c29910at 3127.715 kb on + strand, within PGA1_c29910at 3127.715 kb on + strand, within PGA1_c29910at 3127.741 kb on + strand, within PGA1_c29910at 3127.741 kb on + strand, within PGA1_c29910at 3127.741 kb on + strand, within PGA1_c29910at 3127.761 kb on - strand, within PGA1_c29910at 3127.780 kb on - strand, within PGA1_c29910at 3127.783 kb on - strand, within PGA1_c29910at 3127.783 kb on - strand, within PGA1_c29910at 3127.785 kb on - strand, within PGA1_c29910at 3127.850 kb on - strand, within PGA1_c29910at 3127.851 kb on - strand, within PGA1_c29910at 3127.869 kb on + strand, within PGA1_c29910at 3127.885 kb on - strand, within PGA1_c29910at 3127.885 kb on - strand, within PGA1_c29910at 3127.885 kb on - strand, within PGA1_c29910at 3127.914 kb on + strand, within PGA1_c29910at 3127.947 kb on - strand, within PGA1_c29910at 3127.970 kb on + strand, within PGA1_c29910at 3127.994 kb on + strand, within PGA1_c29910at 3128.000 kb on - strand, within PGA1_c29910at 3128.056 kb on + strand, within PGA1_c29910at 3128.056 kb on + strand, within PGA1_c29910at 3128.056 kb on + strand, within PGA1_c29910at 3128.064 kb on - strand, within PGA1_c29910at 3128.075 kb on - strand, within PGA1_c29910at 3128.086 kb on - strand, within PGA1_c29910at 3128.108 kb on - strand, within PGA1_c29910at 3128.121 kb on + strand, within PGA1_c29910at 3128.179 kb on + strand, within PGA1_c29910at 3128.179 kb on + strand, within PGA1_c29910at 3128.187 kb on - strand, within PGA1_c29910at 3128.214 kb on - strand, within PGA1_c29910at 3128.260 kb on - strand, within PGA1_c29910at 3128.264 kb on - strand, within PGA1_c29910at 3128.267 kb on - strand, within PGA1_c29910at 3128.330 kb on - strand, within PGA1_c29910at 3128.359 kb on - strand, within PGA1_c29910at 3128.362 kb on + strand, within PGA1_c29910at 3128.370 kb on + strand, within PGA1_c29910at 3128.370 kb on - strand, within PGA1_c29910at 3128.370 kb on - strand, within PGA1_c29910at 3128.380 kb on - strand, within PGA1_c29910at 3128.443 kb on + strand, within PGA1_c29910at 3128.454 kb on + strand, within PGA1_c29910at 3128.479 kb on - strand, within PGA1_c29910at 3128.486 kb on + strand, within PGA1_c29910at 3128.590 kb on + strand, within PGA1_c29910at 3128.595 kb on + strand, within PGA1_c29910at 3128.603 kb on - strand, within PGA1_c29910at 3128.603 kb on - strand, within PGA1_c29910at 3128.603 kb on - strand, within PGA1_c29910at 3128.715 kb on + strand, within PGA1_c29910at 3128.736 kb on + strand, within PGA1_c29910at 3128.754 kb on + strand, within PGA1_c29910at 3128.766 kb on + strand, within PGA1_c29910at 3128.829 kb on + strand, within PGA1_c29910at 3128.838 kb on - strand, within PGA1_c29910at 3128.863 kb on - strand, within PGA1_c29910at 3128.897 kb on - strand, within PGA1_c29910at 3128.924 kb on + strand, within PGA1_c29910at 3128.924 kb on + strand, within PGA1_c29910at 3128.931 kb on - strand, within PGA1_c29910at 3128.932 kb on - strand, within PGA1_c29910at 3128.932 kb on - strand, within PGA1_c29910at 3128.932 kb on - strand, within PGA1_c29910at 3128.932 kb on - strand, within PGA1_c29910at 3128.950 kb on + strand, within PGA1_c29910at 3128.950 kb on + strand, within PGA1_c29910at 3128.950 kb on + strand, within PGA1_c29910at 3128.963 kb on - strand, within PGA1_c29910at 3128.963 kb on - strand, within PGA1_c29910at 3129.004 kb on + strand, within PGA1_c29910at 3129.069 kb on - strand, within PGA1_c29910at 3129.092 kb on + strand, within PGA1_c29910at 3129.248 kb on + strandat 3129.273 kb on - strandat 3129.278 kb on - strandat 3129.304 kb on + strandat 3129.304 kb on + strandat 3129.304 kb on + strandat 3129.304 kb on + strandat 3129.304 kb on + strandat 3129.304 kb on + strandat 3129.310 kb on + strandat 3129.342 kb on + strandat 3129.342 kb on + strandat 3129.342 kb on + strandat 3129.342 kb on + strandat 3129.342 kb on + strandat 3129.342 kb on + strandat 3129.342 kb on + strandat 3129.350 kb on - strandat 3129.421 kb on + strandat 3129.427 kb on - strandat 3129.429 kb on - strandat 3129.431 kb on + strandat 3129.431 kb on + strandat 3129.431 kb on + strandat 3129.431 kb on + strandat 3129.431 kb on + strandat 3129.431 kb on + strandat 3129.431 kb on + strandat 3129.431 kb on + strandat 3129.431 kb on + strandat 3129.431 kb on + strandat 3129.431 kb on + strandat 3129.431 kb on + strandat 3129.431 kb on + strandat 3129.431 kb on + strandat 3129.434 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.439 kb on - strandat 3129.467 kb on + strandat 3129.501 kb on - strandat 3129.512 kb on + strandat 3129.531 kb on + strandat 3129.554 kb on - strandat 3129.569 kb on + strandat 3129.571 kb on + strandat 3129.577 kb on - strandat 3129.578 kb on + strandat 3129.578 kb on + strandat 3129.579 kb on - strandat 3129.579 kb on - strandat 3129.637 kb on + strandat 3129.646 kb on + strand, within PGA1_c29920at 3129.651 kb on + strand, within PGA1_c29920at 3129.651 kb on + strand, within PGA1_c29920at 3129.654 kb on - strand, within PGA1_c29920at 3129.659 kb on - strand, within PGA1_c29920at 3129.664 kb on - strand, within PGA1_c29920at 3129.718 kb on + strand, within PGA1_c29920at 3129.723 kb on + strand, within PGA1_c29920at 3129.811 kb on - strand, within PGA1_c29920at 3129.816 kb on + strand, within PGA1_c29920at 3129.819 kb on - strand, within PGA1_c29920at 3129.834 kb on + strand, within PGA1_c29920at 3129.843 kb on - strand, within PGA1_c29920at 3129.853 kb on - strand, within PGA1_c29920at 3129.878 kb on - strand, within PGA1_c29920at 3129.883 kb on - strand, within PGA1_c29920at 3129.888 kb on - strand, within PGA1_c29920at 3129.916 kb on + strand, within PGA1_c29920at 3129.916 kb on + strand, within PGA1_c29920at 3129.989 kb on + strand, within PGA1_c29920at 3130.014 kb on + strand, within PGA1_c29920at 3130.046 kb on + strand, within PGA1_c29920at 3130.046 kb on + strand, within PGA1_c29920at 3130.114 kb on - strand, within PGA1_c29920at 3130.115 kb on + strand, within PGA1_c29920at 3130.116 kb on + strand, within PGA1_c29920at 3130.127 kb on + strand, within PGA1_c29920at 3130.138 kb on + strand, within PGA1_c29920at 3130.146 kb on - strand, within PGA1_c29920at 3130.146 kb on - strand, within PGA1_c29920at 3130.154 kb on - strand, within PGA1_c29920at 3130.164 kb on - strand, within PGA1_c29920at 3130.182 kb on + strand, within PGA1_c29920at 3130.182 kb on + strand, within PGA1_c29920at 3130.190 kb on - strand, within PGA1_c29920at 3130.205 kb on + strand, within PGA1_c29920at 3130.208 kb on - strand, within PGA1_c29920at 3130.213 kb on - strand, within PGA1_c29920at 3130.227 kb on + strand, within PGA1_c29920at 3130.238 kb on + strand, within PGA1_c29920at 3130.246 kb on - strand, within PGA1_c29920at 3130.265 kb on - strand, within PGA1_c29920at 3130.293 kb on + strand, within PGA1_c29920at 3130.303 kb on + strand, within PGA1_c29920

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml
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3,126,791 + -0.1
3,126,811 - -1.5
3,126,813 + +1.5
3,126,821 - +0.2
3,126,836 + +1.4
3,126,843 + +0.5
3,126,851 - +1.1
3,126,868 - -0.1
3,126,868 - +0.1
3,126,889 - -0.2
3,126,894 + +0.6
3,126,899 + +0.8
3,126,899 + +0.0
3,126,902 - -0.7
3,126,902 - +0.4
3,126,907 - +0.2
3,126,907 - -0.1
3,126,907 - -0.3
3,126,938 + PGA1_c29900 0.11 +0.0
3,126,956 + PGA1_c29900 0.21 -0.6
3,127,046 - PGA1_c29900 0.67 +0.3
3,127,046 - PGA1_c29900 0.67 -0.5
3,127,112 - +0.3
3,127,263 - -1.0
3,127,282 + -0.7
3,127,283 + +0.2
3,127,355 - -2.7
3,127,360 - PGA1_c29910 0.10 -0.8
3,127,435 + PGA1_c29910 0.14 -1.3
3,127,443 - PGA1_c29910 0.14 -0.5
3,127,443 - PGA1_c29910 0.14 -1.5
3,127,469 + PGA1_c29910 0.15 +0.1
3,127,512 - PGA1_c29910 0.17 -0.3
3,127,513 + PGA1_c29910 0.17 -0.2
3,127,531 + PGA1_c29910 0.18 +0.1
3,127,533 - PGA1_c29910 0.18 -0.6
3,127,595 - PGA1_c29910 0.21 -2.1
3,127,682 + PGA1_c29910 0.25 -1.8
3,127,705 + PGA1_c29910 0.26 -2.1
3,127,715 + PGA1_c29910 0.26 -0.6
3,127,715 + PGA1_c29910 0.26 -0.9
3,127,741 + PGA1_c29910 0.28 -0.5
3,127,741 + PGA1_c29910 0.28 +0.5
3,127,741 + PGA1_c29910 0.28 -1.3
3,127,761 - PGA1_c29910 0.28 -0.1
3,127,780 - PGA1_c29910 0.29 -1.4
3,127,783 - PGA1_c29910 0.29 -1.0
3,127,783 - PGA1_c29910 0.29 -0.4
3,127,785 - PGA1_c29910 0.30 -0.4
3,127,850 - PGA1_c29910 0.33 -0.8
3,127,851 - PGA1_c29910 0.33 -1.4
3,127,869 + PGA1_c29910 0.33 -0.9
3,127,885 - PGA1_c29910 0.34 -1.3
3,127,885 - PGA1_c29910 0.34 -1.0
3,127,885 - PGA1_c29910 0.34 -1.6
3,127,914 + PGA1_c29910 0.35 +0.8
3,127,947 - PGA1_c29910 0.37 -0.0
3,127,970 + PGA1_c29910 0.38 -0.4
3,127,994 + PGA1_c29910 0.39 -0.3
3,128,000 - PGA1_c29910 0.39 +0.5
3,128,056 + PGA1_c29910 0.42 -0.9
3,128,056 + PGA1_c29910 0.42 -1.0
3,128,056 + PGA1_c29910 0.42 -3.5
3,128,064 - PGA1_c29910 0.42 -3.6
3,128,075 - PGA1_c29910 0.43 -0.7
3,128,086 - PGA1_c29910 0.43 -1.2
3,128,108 - PGA1_c29910 0.44 -2.0
3,128,121 + PGA1_c29910 0.45 -1.1
3,128,179 + PGA1_c29910 0.48 -1.6
3,128,179 + PGA1_c29910 0.48 -1.7
3,128,187 - PGA1_c29910 0.48 -1.5
3,128,214 - PGA1_c29910 0.49 -1.9
3,128,260 - PGA1_c29910 0.51 -1.1
3,128,264 - PGA1_c29910 0.52 -0.2
3,128,267 - PGA1_c29910 0.52 -1.4
3,128,330 - PGA1_c29910 0.55 -0.3
3,128,359 - PGA1_c29910 0.56 -2.1
3,128,362 + PGA1_c29910 0.56 -0.4
3,128,370 + PGA1_c29910 0.56 -1.1
3,128,370 - PGA1_c29910 0.56 -0.1
3,128,370 - PGA1_c29910 0.56 +0.8
3,128,380 - PGA1_c29910 0.57 +0.2
3,128,443 + PGA1_c29910 0.60 -3.2
3,128,454 + PGA1_c29910 0.60 -1.9
3,128,479 - PGA1_c29910 0.61 -0.7
3,128,486 + PGA1_c29910 0.62 -0.1
3,128,590 + PGA1_c29910 0.66 -0.9
3,128,595 + PGA1_c29910 0.67 -1.3
3,128,603 - PGA1_c29910 0.67 -0.7
3,128,603 - PGA1_c29910 0.67 -0.6
3,128,603 - PGA1_c29910 0.67 -2.1
3,128,715 + PGA1_c29910 0.72 -0.1
3,128,736 + PGA1_c29910 0.73 -0.6
3,128,754 + PGA1_c29910 0.74 -1.1
3,128,766 + PGA1_c29910 0.75 -0.2
3,128,829 + PGA1_c29910 0.77 -0.9
3,128,838 - PGA1_c29910 0.78 -1.0
3,128,863 - PGA1_c29910 0.79 -1.8
3,128,897 - PGA1_c29910 0.81 -1.3
3,128,924 + PGA1_c29910 0.82 -1.6
3,128,924 + PGA1_c29910 0.82 +0.2
3,128,931 - PGA1_c29910 0.82 +0.4
3,128,932 - PGA1_c29910 0.82 -0.2
3,128,932 - PGA1_c29910 0.82 -0.3
3,128,932 - PGA1_c29910 0.82 +0.2
3,128,932 - PGA1_c29910 0.82 +0.1
3,128,950 + PGA1_c29910 0.83 -1.1
3,128,950 + PGA1_c29910 0.83 -0.2
3,128,950 + PGA1_c29910 0.83 -1.5
3,128,963 - PGA1_c29910 0.84 -1.8
3,128,963 - PGA1_c29910 0.84 -0.6
3,129,004 + PGA1_c29910 0.85 -0.3
3,129,069 - PGA1_c29910 0.88 +0.5
3,129,092 + PGA1_c29910 0.90 -1.3
3,129,248 + +0.0
3,129,273 - -1.4
3,129,278 - -1.1
3,129,304 + -0.3
3,129,304 + -2.3
3,129,304 + -0.1
3,129,304 + -0.9
3,129,304 + -0.7
3,129,304 + -0.8
3,129,310 + -2.0
3,129,342 + -2.2
3,129,342 + -0.4
3,129,342 + -0.2
3,129,342 + +1.1
3,129,342 + -1.2
3,129,342 + +0.0
3,129,342 + +0.8
3,129,350 - +0.4
3,129,421 + -0.3
3,129,427 - -0.5
3,129,429 - +0.0
3,129,431 + -0.0
3,129,431 + +1.0
3,129,431 + +0.5
3,129,431 + -1.6
3,129,431 + -0.8
3,129,431 + -0.3
3,129,431 + +0.3
3,129,431 + +0.2
3,129,431 + +0.0
3,129,431 + -1.4
3,129,431 + -0.3
3,129,431 + +0.0
3,129,431 + -0.1
3,129,431 + +0.4
3,129,434 - -0.3
3,129,439 - -0.2
3,129,439 - -1.2
3,129,439 - +0.7
3,129,439 - +0.2
3,129,439 - +0.5
3,129,439 - +0.3
3,129,439 - -1.4
3,129,439 - +0.1
3,129,439 - +0.1
3,129,439 - +0.5
3,129,439 - +0.7
3,129,439 - -0.1
3,129,439 - -1.1
3,129,439 - -0.9
3,129,439 - +0.3
3,129,439 - +0.1
3,129,439 - -0.3
3,129,439 - -0.3
3,129,467 + +0.7
3,129,501 - +0.6
3,129,512 + +0.2
3,129,531 + -1.3
3,129,554 - +0.5
3,129,569 + -0.7
3,129,571 + -0.5
3,129,577 - +0.0
3,129,578 + -0.1
3,129,578 + +0.5
3,129,579 - -0.4
3,129,579 - -0.4
3,129,637 + +0.3
3,129,646 + PGA1_c29920 0.10 -0.4
3,129,651 + PGA1_c29920 0.10 -0.4
3,129,651 + PGA1_c29920 0.10 -0.1
3,129,654 - PGA1_c29920 0.11 +1.1
3,129,659 - PGA1_c29920 0.11 -1.1
3,129,664 - PGA1_c29920 0.12 -0.9
3,129,718 + PGA1_c29920 0.17 +1.5
3,129,723 + PGA1_c29920 0.17 +1.0
3,129,811 - PGA1_c29920 0.25 -0.3
3,129,816 + PGA1_c29920 0.25 -1.0
3,129,819 - PGA1_c29920 0.26 +0.3
3,129,834 + PGA1_c29920 0.27 +1.2
3,129,843 - PGA1_c29920 0.28 -1.6
3,129,853 - PGA1_c29920 0.29 +0.2
3,129,878 - PGA1_c29920 0.31 -1.5
3,129,883 - PGA1_c29920 0.32 +0.5
3,129,888 - PGA1_c29920 0.32 +0.6
3,129,916 + PGA1_c29920 0.35 -1.2
3,129,916 + PGA1_c29920 0.35 +1.2
3,129,989 + PGA1_c29920 0.41 -0.3
3,130,014 + PGA1_c29920 0.43 -0.5
3,130,046 + PGA1_c29920 0.46 -0.0
3,130,046 + PGA1_c29920 0.46 +0.1
3,130,114 - PGA1_c29920 0.52 +0.1
3,130,115 + PGA1_c29920 0.53 +0.6
3,130,116 + PGA1_c29920 0.53 +0.1
3,130,127 + PGA1_c29920 0.54 +0.3
3,130,138 + PGA1_c29920 0.55 +0.3
3,130,146 - PGA1_c29920 0.55 -1.0
3,130,146 - PGA1_c29920 0.55 +0.0
3,130,154 - PGA1_c29920 0.56 -0.9
3,130,164 - PGA1_c29920 0.57 -0.2
3,130,182 + PGA1_c29920 0.59 +1.2
3,130,182 + PGA1_c29920 0.59 +0.3
3,130,190 - PGA1_c29920 0.59 -0.3
3,130,205 + PGA1_c29920 0.61 +0.9
3,130,208 - PGA1_c29920 0.61 -0.1
3,130,213 - PGA1_c29920 0.61 +1.0
3,130,227 + PGA1_c29920 0.63 -0.2
3,130,238 + PGA1_c29920 0.64 -0.1
3,130,246 - PGA1_c29920 0.64 +0.1
3,130,265 - PGA1_c29920 0.66 +0.7
3,130,293 + PGA1_c29920 0.69 +0.3
3,130,303 + PGA1_c29920 0.70 -0.3

Or see this region's nucleotide sequence