Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24320 and PGA1_c24330 are separated by 4 nucleotides PGA1_c24330 and PGA1_c24340 are separated by 21 nucleotides PGA1_c24340 and PGA1_c24350 are separated by 78 nucleotides
PGA1_c24320: PGA1_c24320 - putative capsule polysaccharide export inner-membrane protein, at 2,536,798 to 2,538,504
_c24320
PGA1_c24330: PGA1_c24330 - 2-dehydro-3-deoxyphosphooctonate aldolase KdsA, at 2,538,509 to 2,539,342
_c24330
PGA1_c24340: PGA1_c24340 - phosphomannomutase/phosphoglucomutase AlgC, at 2,539,364 to 2,540,860
_c24340
PGA1_c24350: PGA1_c24350 - Uncharacterized protein involved in outer membrane biogenesis, at 2,540,939 to 2,542,891
_c24350
Position (kb)
2539
2540
2541 Strain fitness (log2 ratio)
-2
-1
0
1 at 2538.366 kb on + strand at 2538.374 kb on - strand at 2539.323 kb on - strand at 2539.339 kb on - strand at 2539.890 kb on - strand, within PGA1_c24340 at 2539.969 kb on - strand, within PGA1_c24340 at 2540.532 kb on - strand, within PGA1_c24340 at 2540.854 kb on - strand at 2540.854 kb on - strand at 2540.919 kb on + strand at 2541.022 kb on - strand at 2541.067 kb on + strand at 2541.080 kb on - strand at 2541.119 kb on + strand at 2541.119 kb on + strand at 2541.142 kb on - strand, within PGA1_c24350 at 2541.142 kb on - strand, within PGA1_c24350 at 2541.263 kb on - strand, within PGA1_c24350 at 2541.286 kb on + strand, within PGA1_c24350 at 2541.288 kb on + strand, within PGA1_c24350 at 2541.321 kb on - strand, within PGA1_c24350 at 2541.411 kb on - strand, within PGA1_c24350 at 2541.411 kb on - strand, within PGA1_c24350 at 2541.470 kb on - strand, within PGA1_c24350 at 2541.470 kb on - strand, within PGA1_c24350 at 2541.517 kb on - strand, within PGA1_c24350 at 2541.540 kb on - strand, within PGA1_c24350 at 2541.541 kb on - strand, within PGA1_c24350 at 2541.602 kb on + strand, within PGA1_c24350 at 2541.628 kb on + strand, within PGA1_c24350 at 2541.636 kb on - strand, within PGA1_c24350 at 2541.636 kb on - strand, within PGA1_c24350 at 2541.685 kb on + strand, within PGA1_c24350 at 2541.706 kb on + strand, within PGA1_c24350 at 2541.706 kb on + strand, within PGA1_c24350 at 2541.714 kb on - strand, within PGA1_c24350 at 2541.714 kb on - strand, within PGA1_c24350 at 2541.714 kb on - strand, within PGA1_c24350 at 2541.776 kb on + strand, within PGA1_c24350 at 2541.784 kb on - strand, within PGA1_c24350 at 2541.784 kb on - strand, within PGA1_c24350 at 2541.784 kb on - strand, within PGA1_c24350 at 2541.811 kb on + strand, within PGA1_c24350 at 2541.843 kb on - strand, within PGA1_c24350
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 2,538,366 + -0.3 2,538,374 - -0.6 2,539,323 - -1.0 2,539,339 - -1.4 2,539,890 - PGA1_c24340 0.35 -0.6 2,539,969 - PGA1_c24340 0.40 +0.2 2,540,532 - PGA1_c24340 0.78 -2.2 2,540,854 - -0.1 2,540,854 - +0.7 2,540,919 + +0.2 2,541,022 - +0.0 2,541,067 + +0.1 2,541,080 - -0.7 2,541,119 + +0.2 2,541,119 + -0.4 2,541,142 - PGA1_c24350 0.10 +0.5 2,541,142 - PGA1_c24350 0.10 +0.2 2,541,263 - PGA1_c24350 0.17 -0.3 2,541,286 + PGA1_c24350 0.18 +0.9 2,541,288 + PGA1_c24350 0.18 -0.1 2,541,321 - PGA1_c24350 0.20 +0.6 2,541,411 - PGA1_c24350 0.24 -0.9 2,541,411 - PGA1_c24350 0.24 +0.3 2,541,470 - PGA1_c24350 0.27 -0.1 2,541,470 - PGA1_c24350 0.27 -0.5 2,541,517 - PGA1_c24350 0.30 +1.2 2,541,540 - PGA1_c24350 0.31 +0.1 2,541,541 - PGA1_c24350 0.31 +0.0 2,541,602 + PGA1_c24350 0.34 -0.2 2,541,628 + PGA1_c24350 0.35 +0.4 2,541,636 - PGA1_c24350 0.36 +0.4 2,541,636 - PGA1_c24350 0.36 +0.3 2,541,685 + PGA1_c24350 0.38 -0.3 2,541,706 + PGA1_c24350 0.39 +0.2 2,541,706 + PGA1_c24350 0.39 -0.2 2,541,714 - PGA1_c24350 0.40 -0.1 2,541,714 - PGA1_c24350 0.40 +0.7 2,541,714 - PGA1_c24350 0.40 -0.3 2,541,776 + PGA1_c24350 0.43 -1.7 2,541,784 - PGA1_c24350 0.43 -0.0 2,541,784 - PGA1_c24350 0.43 +0.6 2,541,784 - PGA1_c24350 0.43 -0.2 2,541,811 + PGA1_c24350 0.45 +0.1 2,541,843 - PGA1_c24350 0.46 -2.3
Or see this region's nucleotide sequence