Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23360

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c23350 and PGA1_c23360 are separated by 93 nucleotidesPGA1_c23360 and PGA1_c23370 are separated by 148 nucleotidesPGA1_c23370 and PGA1_c23380 are separated by 537 nucleotides PGA1_c23350: PGA1_c23350 - succinate-semialdehyde dehdyrogenase GabD, at 2,425,695 to 2,427,077 _c23350 PGA1_c23360: PGA1_c23360 - putative iron containing alcohol dehydrogenase, at 2,427,171 to 2,428,316 _c23360 PGA1_c23370: PGA1_c23370 - hypothetical protein, at 2,428,465 to 2,428,605 _c23370 PGA1_c23380: PGA1_c23380 - choline/ethanolamine kinase-like protein, at 2,429,143 to 2,430,069 _c23380 Position (kb) 2427 2428 2429Strain fitness (log2 ratio) -2 -1 0 1 2at 2428.284 kb on + strandat 2428.285 kb on + strandat 2428.310 kb on + strandat 2428.317 kb on - strandat 2428.317 kb on - strandat 2428.339 kb on + strandat 2428.342 kb on - strandat 2428.352 kb on - strandat 2428.376 kb on + strandat 2428.384 kb on - strandat 2428.427 kb on + strandat 2428.438 kb on - strandat 2428.458 kb on + strandat 2428.534 kb on + strand, within PGA1_c23370at 2428.547 kb on - strand, within PGA1_c23370at 2428.555 kb on + strand, within PGA1_c23370at 2428.555 kb on + strand, within PGA1_c23370at 2428.561 kb on + strand, within PGA1_c23370at 2428.563 kb on - strand, within PGA1_c23370at 2428.564 kb on - strand, within PGA1_c23370at 2428.630 kb on - strandat 2428.657 kb on - strandat 2428.681 kb on + strandat 2428.689 kb on - strandat 2428.717 kb on + strandat 2428.717 kb on + strandat 2428.717 kb on + strandat 2428.717 kb on + strandat 2428.725 kb on - strandat 2428.725 kb on - strandat 2428.725 kb on - strandat 2428.725 kb on - strandat 2428.725 kb on - strandat 2428.725 kb on - strandat 2428.725 kb on - strandat 2428.752 kb on + strandat 2428.752 kb on + strandat 2428.752 kb on + strandat 2428.752 kb on + strandat 2428.752 kb on + strandat 2428.752 kb on + strandat 2428.752 kb on + strandat 2428.752 kb on + strandat 2428.752 kb on + strandat 2428.752 kb on + strandat 2428.752 kb on + strandat 2428.752 kb on + strandat 2428.752 kb on + strandat 2428.752 kb on + strandat 2428.757 kb on + strandat 2428.757 kb on + strandat 2428.757 kb on + strandat 2428.757 kb on + strandat 2428.757 kb on + strandat 2428.757 kb on + strandat 2428.760 kb on - strandat 2428.760 kb on - strandat 2428.760 kb on - strandat 2428.760 kb on - strandat 2428.760 kb on - strandat 2428.760 kb on - strandat 2428.760 kb on - strandat 2428.760 kb on - strandat 2428.760 kb on - strandat 2428.762 kb on + strandat 2428.765 kb on - strandat 2428.765 kb on - strandat 2428.765 kb on - strandat 2428.765 kb on - strandat 2428.765 kb on - strandat 2428.765 kb on - strandat 2428.765 kb on - strandat 2428.775 kb on - strandat 2428.794 kb on + strandat 2428.798 kb on + strandat 2428.827 kb on - strandat 2428.828 kb on - strandat 2428.865 kb on + strandat 2428.933 kb on + strandat 2428.943 kb on + strandat 2428.951 kb on - strandat 2428.984 kb on - strandat 2428.987 kb on + strandat 2428.987 kb on - strandat 2429.017 kb on + strandat 2429.033 kb on - strandat 2429.084 kb on + strandat 2429.086 kb on - strandat 2429.091 kb on + strandat 2429.099 kb on - strandat 2429.101 kb on - strandat 2429.119 kb on - strandat 2429.143 kb on - strandat 2429.191 kb on + strandat 2429.199 kb on - strandat 2429.199 kb on - strandat 2429.199 kb on - strandat 2429.206 kb on - strandat 2429.285 kb on + strand, within PGA1_c23380

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml
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2,428,284 + -0.2
2,428,285 + +0.5
2,428,310 + -0.5
2,428,317 - -0.7
2,428,317 - +1.2
2,428,339 + +1.0
2,428,342 - -0.4
2,428,352 - +0.8
2,428,376 + +0.4
2,428,384 - -0.3
2,428,427 + +0.9
2,428,438 - +0.9
2,428,458 + +0.6
2,428,534 + PGA1_c23370 0.49 -0.1
2,428,547 - PGA1_c23370 0.58 -0.4
2,428,555 + PGA1_c23370 0.64 +0.5
2,428,555 + PGA1_c23370 0.64 +0.5
2,428,561 + PGA1_c23370 0.68 -0.1
2,428,563 - PGA1_c23370 0.70 +0.2
2,428,564 - PGA1_c23370 0.70 +0.3
2,428,630 - -0.2
2,428,657 - +1.2
2,428,681 + -0.7
2,428,689 - -0.7
2,428,717 + +0.3
2,428,717 + -0.6
2,428,717 + +0.7
2,428,717 + -0.2
2,428,725 - -0.7
2,428,725 - +0.5
2,428,725 - -0.2
2,428,725 - +0.2
2,428,725 - +1.5
2,428,725 - -0.1
2,428,725 - -0.6
2,428,752 + -0.3
2,428,752 + -1.6
2,428,752 + +0.5
2,428,752 + +0.2
2,428,752 + -0.7
2,428,752 + +0.4
2,428,752 + -0.3
2,428,752 + -0.2
2,428,752 + -1.1
2,428,752 + +1.8
2,428,752 + +0.4
2,428,752 + -0.3
2,428,752 + -0.4
2,428,752 + -0.8
2,428,757 + -1.8
2,428,757 + -0.9
2,428,757 + +1.0
2,428,757 + -0.9
2,428,757 + -0.7
2,428,757 + -0.6
2,428,760 - -0.2
2,428,760 - +0.2
2,428,760 - +0.1
2,428,760 - -1.7
2,428,760 - +0.5
2,428,760 - +0.4
2,428,760 - +0.9
2,428,760 - -0.6
2,428,760 - -0.2
2,428,762 + -0.8
2,428,765 - +0.4
2,428,765 - -0.9
2,428,765 - +0.8
2,428,765 - +0.2
2,428,765 - -0.3
2,428,765 - +0.2
2,428,765 - -2.3
2,428,775 - +0.3
2,428,794 + +0.4
2,428,798 + +1.0
2,428,827 - -0.2
2,428,828 - -0.6
2,428,865 + -0.1
2,428,933 + -1.5
2,428,943 + +0.3
2,428,951 - +0.7
2,428,984 - -0.4
2,428,987 + -0.1
2,428,987 - +0.1
2,429,017 + +0.8
2,429,033 - -0.5
2,429,084 + -0.5
2,429,086 - +0.9
2,429,091 + +1.0
2,429,099 - +0.2
2,429,101 - -0.0
2,429,119 - +0.2
2,429,143 - -0.6
2,429,191 + +0.0
2,429,199 - +1.3
2,429,199 - +0.2
2,429,199 - +1.4
2,429,206 - +0.2
2,429,285 + PGA1_c23380 0.15 +0.3

Or see this region's nucleotide sequence