Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17550

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c17530 and PGA1_c17540 are separated by 256 nucleotidesPGA1_c17540 and PGA1_c17550 are separated by 302 nucleotidesPGA1_c17550 and PGA1_c17560 are separated by 16 nucleotides PGA1_c17530: PGA1_c17530 - phosphoglycerate kinase Pgk, at 1,837,439 to 1,838,629 _c17530 PGA1_c17540: PGA1_c17540 - septum formation initiator-like protein, at 1,838,886 to 1,839,185 _c17540 PGA1_c17550: PGA1_c17550 - pyruvate dehydrogenase E1 component subunit alpha, at 1,839,488 to 1,840,501 _c17550 PGA1_c17560: PGA1_c17560 - pyruvate dehydrogenase E1 component subunit beta, at 1,840,518 to 1,841,903 _c17560 Position (kb) 1839 1840 1841Strain fitness (log2 ratio) -1 0 1at 1838.678 kb on + strandat 1838.678 kb on + strandat 1838.743 kb on + strandat 1839.188 kb on + strandat 1839.314 kb on - strandat 1839.354 kb on - strandat 1839.361 kb on - strandat 1839.377 kb on + strandat 1839.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml
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1,838,678 + +0.7
1,838,678 + -0.7
1,838,743 + -0.1
1,839,188 + +0.3
1,839,314 - -0.4
1,839,354 - -1.0
1,839,361 - +0.3
1,839,377 + +0.3
1,839,394 - -0.4

Or see this region's nucleotide sequence