Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17250

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c17240 and PGA1_c17250 are separated by 280 nucleotidesPGA1_c17250 and PGA1_c17260 are separated by 101 nucleotidesPGA1_c17260 and PGA1_c17270 are separated by 71 nucleotidesPGA1_c17270 and PGA1_c17280 are separated by 142 nucleotides PGA1_c17240: PGA1_c17240 - Uncharacterized protein conserved in bacteria, at 1,800,236 to 1,801,186 _c17240 PGA1_c17250: PGA1_c17250 - glyceraldehyde-3-phosphate dehydrogenase 2, at 1,801,467 to 1,802,468 _c17250 PGA1_c17260: PGA1_c17260 - hypothetical protein, at 1,802,570 to 1,802,713 _c17260 PGA1_c17270: PGA1_c17270 - phosphopantetheine adenylyltransferase CoaA, at 1,802,785 to 1,803,279 _c17270 PGA1_c17280: PGA1_c17280 - cystathionine beta-synthase-like protein, at 1,803,422 to 1,803,856 _c17280 Position (kb) 1801 1802 1803Strain fitness (log2 ratio) -2 -1 0 1at 1800.475 kb on + strand, within PGA1_c17240at 1800.493 kb on - strand, within PGA1_c17240at 1800.514 kb on - strand, within PGA1_c17240at 1800.539 kb on + strand, within PGA1_c17240at 1800.547 kb on - strand, within PGA1_c17240at 1800.594 kb on - strand, within PGA1_c17240at 1800.717 kb on + strand, within PGA1_c17240at 1800.746 kb on + strand, within PGA1_c17240at 1800.767 kb on - strand, within PGA1_c17240at 1800.776 kb on + strand, within PGA1_c17240at 1800.885 kb on - strand, within PGA1_c17240at 1801.088 kb on - strand, within PGA1_c17240at 1801.219 kb on + strandat 1801.221 kb on - strandat 1801.227 kb on - strandat 1801.232 kb on - strandat 1801.232 kb on - strandat 1801.245 kb on + strandat 1801.253 kb on - strandat 1801.292 kb on + strandat 1801.292 kb on + strandat 1801.318 kb on + strandat 1801.361 kb on + strandat 1801.369 kb on - strandat 1801.458 kb on - strandat 1801.516 kb on + strandat 1801.542 kb on - strandat 1801.559 kb on + strandat 1801.566 kb on + strandat 1801.670 kb on + strand, within PGA1_c17250at 1801.716 kb on + strand, within PGA1_c17250at 1801.724 kb on - strand, within PGA1_c17250at 1801.751 kb on - strand, within PGA1_c17250at 1801.790 kb on - strand, within PGA1_c17250at 1801.795 kb on - strand, within PGA1_c17250at 1801.806 kb on + strand, within PGA1_c17250at 1801.823 kb on - strand, within PGA1_c17250at 1801.823 kb on - strand, within PGA1_c17250at 1801.850 kb on + strand, within PGA1_c17250at 1801.925 kb on + strand, within PGA1_c17250at 1801.943 kb on + strand, within PGA1_c17250at 1802.064 kb on + strand, within PGA1_c17250at 1802.111 kb on + strand, within PGA1_c17250at 1802.335 kb on + strand, within PGA1_c17250at 1802.352 kb on + strand, within PGA1_c17250at 1802.360 kb on - strand, within PGA1_c17250at 1802.360 kb on - strand, within PGA1_c17250at 1802.360 kb on - strand, within PGA1_c17250at 1802.414 kb on + strandat 1802.470 kb on - strandat 1802.471 kb on - strandat 1802.493 kb on + strandat 1802.519 kb on - strandat 1802.530 kb on + strandat 1802.588 kb on - strand, within PGA1_c17260at 1802.608 kb on - strand, within PGA1_c17260at 1802.680 kb on - strand, within PGA1_c17260at 1803.344 kb on - strandat 1803.363 kb on + strandat 1803.391 kb on - strandat 1803.396 kb on + strandat 1803.437 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml
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1,800,475 + PGA1_c17240 0.25 -1.0
1,800,493 - PGA1_c17240 0.27 +0.4
1,800,514 - PGA1_c17240 0.29 -0.0
1,800,539 + PGA1_c17240 0.32 +0.3
1,800,547 - PGA1_c17240 0.33 -0.4
1,800,594 - PGA1_c17240 0.38 -0.5
1,800,717 + PGA1_c17240 0.51 +0.6
1,800,746 + PGA1_c17240 0.54 -0.0
1,800,767 - PGA1_c17240 0.56 +0.3
1,800,776 + PGA1_c17240 0.57 -0.5
1,800,885 - PGA1_c17240 0.68 +1.4
1,801,088 - PGA1_c17240 0.90 -0.2
1,801,219 + +0.3
1,801,221 - +0.2
1,801,227 - +0.4
1,801,232 - -0.9
1,801,232 - -0.7
1,801,245 + -0.1
1,801,253 - +0.3
1,801,292 + +0.4
1,801,292 + -1.4
1,801,318 + -0.4
1,801,361 + -0.4
1,801,369 - -0.3
1,801,458 - +0.3
1,801,516 + -1.0
1,801,542 - -0.1
1,801,559 + -0.4
1,801,566 + -0.5
1,801,670 + PGA1_c17250 0.20 -0.1
1,801,716 + PGA1_c17250 0.25 +0.7
1,801,724 - PGA1_c17250 0.26 +0.3
1,801,751 - PGA1_c17250 0.28 +0.1
1,801,790 - PGA1_c17250 0.32 -0.5
1,801,795 - PGA1_c17250 0.33 +0.6
1,801,806 + PGA1_c17250 0.34 -0.2
1,801,823 - PGA1_c17250 0.36 +0.4
1,801,823 - PGA1_c17250 0.36 +0.3
1,801,850 + PGA1_c17250 0.38 +0.1
1,801,925 + PGA1_c17250 0.46 +0.1
1,801,943 + PGA1_c17250 0.48 -0.8
1,802,064 + PGA1_c17250 0.60 -0.4
1,802,111 + PGA1_c17250 0.64 -0.1
1,802,335 + PGA1_c17250 0.87 +0.4
1,802,352 + PGA1_c17250 0.88 -0.3
1,802,360 - PGA1_c17250 0.89 -0.7
1,802,360 - PGA1_c17250 0.89 -1.1
1,802,360 - PGA1_c17250 0.89 -1.4
1,802,414 + +0.2
1,802,470 - -0.0
1,802,471 - -1.1
1,802,493 + +0.1
1,802,519 - +0.8
1,802,530 + +0.6
1,802,588 - PGA1_c17260 0.12 -0.9
1,802,608 - PGA1_c17260 0.26 -0.5
1,802,680 - PGA1_c17260 0.76 -0.5
1,803,344 - -1.9
1,803,363 + -2.2
1,803,391 - -0.1
1,803,396 + +0.8
1,803,437 - -0.5

Or see this region's nucleotide sequence