Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17030 and PGA1_c17040 are separated by 122 nucleotides PGA1_c17040 and PGA1_c17050 are separated by 53 nucleotides PGA1_c17050 and PGA1_c17060 are separated by 131 nucleotides PGA1_c17060 and PGA1_c17070 are separated by 20 nucleotides
PGA1_c17030: PGA1_c17030 - peptidoglycan binding domain-containing protein, at 1,779,394 to 1,780,005
_c17030
PGA1_c17040: PGA1_c17040 - cytochrome c-type biogenesis protein CcmE, at 1,780,128 to 1,780,571
_c17040
PGA1_c17050: PGA1_c17050 - N-acetyl-gamma-glutamyl-phosphate reductase ArgC, at 1,780,625 to 1,781,653
_c17050
PGA1_c17060: PGA1_c17060 - putative glutamate racemase, at 1,781,785 to 1,782,594
_c17060
PGA1_c17070: PGA1_c17070 - acetyltransferase domain-containing protein, at 1,782,615 to 1,783,565
_c17070
Position (kb) 1780
1781
1782 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1779.877 kb on - strand, within PGA1_c17030 at 1779.911 kb on - strand, within PGA1_c17030 at 1779.945 kb on + strand at 1780.118 kb on - strand at 1780.588 kb on - strand at 1780.614 kb on + strand at 1780.880 kb on + strand, within PGA1_c17050 at 1781.089 kb on + strand, within PGA1_c17050 at 1781.166 kb on - strand, within PGA1_c17050 at 1781.171 kb on - strand, within PGA1_c17050 at 1781.171 kb on - strand, within PGA1_c17050 at 1781.190 kb on - strand, within PGA1_c17050 at 1781.275 kb on - strand, within PGA1_c17050 at 1781.499 kb on - strand, within PGA1_c17050 at 1781.538 kb on + strand, within PGA1_c17050 at 1781.610 kb on - strand at 1781.675 kb on + strand at 1781.683 kb on - strand at 1781.694 kb on + strand at 1781.759 kb on - strand at 1781.759 kb on - strand at 1781.869 kb on - strand, within PGA1_c17060 at 1781.872 kb on + strand, within PGA1_c17060 at 1781.874 kb on - strand, within PGA1_c17060 at 1781.922 kb on + strand, within PGA1_c17060 at 1781.969 kb on - strand, within PGA1_c17060 at 1782.011 kb on - strand, within PGA1_c17060 at 1782.014 kb on + strand, within PGA1_c17060 at 1782.076 kb on + strand, within PGA1_c17060 at 1782.094 kb on + strand, within PGA1_c17060 at 1782.120 kb on + strand, within PGA1_c17060 at 1782.131 kb on + strand, within PGA1_c17060 at 1782.131 kb on + strand, within PGA1_c17060 at 1782.131 kb on + strand, within PGA1_c17060 at 1782.223 kb on - strand, within PGA1_c17060 at 1782.349 kb on - strand, within PGA1_c17060 at 1782.396 kb on - strand, within PGA1_c17060 at 1782.416 kb on + strand, within PGA1_c17060 at 1782.419 kb on - strand, within PGA1_c17060 at 1782.437 kb on + strand, within PGA1_c17060 at 1782.475 kb on + strand, within PGA1_c17060 at 1782.477 kb on - strand, within PGA1_c17060 at 1782.483 kb on - strand, within PGA1_c17060 at 1782.484 kb on - strand, within PGA1_c17060 at 1782.542 kb on + strand at 1782.601 kb on + strand at 1782.609 kb on - strand at 1782.632 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 1,779,877 - PGA1_c17030 0.79 -0.2 1,779,911 - PGA1_c17030 0.84 +0.7 1,779,945 + -0.5 1,780,118 - +0.2 1,780,588 - -0.3 1,780,614 + -0.8 1,780,880 + PGA1_c17050 0.25 +0.7 1,781,089 + PGA1_c17050 0.45 +2.0 1,781,166 - PGA1_c17050 0.53 +0.2 1,781,171 - PGA1_c17050 0.53 +1.2 1,781,171 - PGA1_c17050 0.53 +0.6 1,781,190 - PGA1_c17050 0.55 +0.8 1,781,275 - PGA1_c17050 0.63 +1.9 1,781,499 - PGA1_c17050 0.85 +0.5 1,781,538 + PGA1_c17050 0.89 +1.1 1,781,610 - +1.2 1,781,675 + -0.4 1,781,683 - -0.5 1,781,694 + -0.6 1,781,759 - -0.2 1,781,759 - -0.9 1,781,869 - PGA1_c17060 0.10 -3.6 1,781,872 + PGA1_c17060 0.11 -2.9 1,781,874 - PGA1_c17060 0.11 -3.4 1,781,922 + PGA1_c17060 0.17 -4.1 1,781,969 - PGA1_c17060 0.23 -2.5 1,782,011 - PGA1_c17060 0.28 -2.8 1,782,014 + PGA1_c17060 0.28 -2.0 1,782,076 + PGA1_c17060 0.36 -2.6 1,782,094 + PGA1_c17060 0.38 -2.9 1,782,120 + PGA1_c17060 0.41 -2.8 1,782,131 + PGA1_c17060 0.43 -2.5 1,782,131 + PGA1_c17060 0.43 -4.2 1,782,131 + PGA1_c17060 0.43 -3.0 1,782,223 - PGA1_c17060 0.54 -4.0 1,782,349 - PGA1_c17060 0.70 -3.3 1,782,396 - PGA1_c17060 0.75 -4.3 1,782,416 + PGA1_c17060 0.78 -3.1 1,782,419 - PGA1_c17060 0.78 -2.7 1,782,437 + PGA1_c17060 0.80 -3.7 1,782,475 + PGA1_c17060 0.85 -3.9 1,782,477 - PGA1_c17060 0.85 -1.5 1,782,483 - PGA1_c17060 0.86 -1.1 1,782,484 - PGA1_c17060 0.86 -2.0 1,782,542 + -2.1 1,782,601 + -3.5 1,782,609 - -2.5 1,782,632 + -1.5
Or see this region's nucleotide sequence