Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16970

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c16960 and PGA1_c16970 are separated by 126 nucleotidesPGA1_c16970 and PGA1_c16980 are separated by 330 nucleotides PGA1_c16960: PGA1_c16960 - glutamyl-tRNA synthetase GltX, at 1,771,064 to 1,772,464 _c16960 PGA1_c16970: PGA1_c16970 - citrate synthase GltA, at 1,772,591 to 1,773,886 _c16970 PGA1_c16980: PGA1_c16980 - Hemolysin-type calcium-binding repeat (2 copies)., at 1,774,217 to 1,775,113 _c16980 Position (kb) 1772 1773 1774Strain fitness (log2 ratio) -1 0 1at 1773.885 kb on + strandat 1773.970 kb on - strandat 1773.992 kb on + strandat 1773.992 kb on + strandat 1773.995 kb on - strandat 1774.043 kb on - strandat 1774.102 kb on + strandat 1774.140 kb on + strandat 1774.148 kb on - strandat 1774.166 kb on + strandat 1774.168 kb on + strandat 1774.186 kb on - strandat 1774.197 kb on + strandat 1774.242 kb on + strandat 1774.242 kb on + strandat 1774.242 kb on + strandat 1774.242 kb on + strandat 1774.245 kb on - strandat 1774.245 kb on - strandat 1774.245 kb on - strandat 1774.250 kb on - strandat 1774.250 kb on - strandat 1774.250 kb on - strandat 1774.250 kb on - strandat 1774.250 kb on - strandat 1774.250 kb on - strandat 1774.252 kb on + strandat 1774.275 kb on - strandat 1774.423 kb on + strand, within PGA1_c16980at 1774.575 kb on - strand, within PGA1_c16980at 1774.575 kb on - strand, within PGA1_c16980at 1774.632 kb on + strand, within PGA1_c16980at 1774.633 kb on - strand, within PGA1_c16980at 1774.688 kb on + strand, within PGA1_c16980at 1774.713 kb on + strand, within PGA1_c16980at 1774.723 kb on + strand, within PGA1_c16980at 1774.731 kb on - strand, within PGA1_c16980at 1774.731 kb on - strand, within PGA1_c16980at 1774.735 kb on + strand, within PGA1_c16980at 1774.748 kb on - strand, within PGA1_c16980at 1774.796 kb on + strand, within PGA1_c16980at 1774.796 kb on + strand, within PGA1_c16980at 1774.804 kb on - strand, within PGA1_c16980at 1774.804 kb on - strand, within PGA1_c16980

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml
remove
1,773,885 + +1.7
1,773,970 - +1.6
1,773,992 + +0.1
1,773,992 + +0.5
1,773,995 - -0.0
1,774,043 - -1.2
1,774,102 + -0.0
1,774,140 + -0.7
1,774,148 - -0.4
1,774,166 + -0.2
1,774,168 + +1.0
1,774,186 - +0.0
1,774,197 + -0.3
1,774,242 + +0.1
1,774,242 + +0.7
1,774,242 + -0.5
1,774,242 + -0.3
1,774,245 - -0.6
1,774,245 - +0.1
1,774,245 - -0.5
1,774,250 - +0.8
1,774,250 - -0.1
1,774,250 - +0.0
1,774,250 - +1.2
1,774,250 - -0.2
1,774,250 - +1.0
1,774,252 + +0.6
1,774,275 - +0.2
1,774,423 + PGA1_c16980 0.23 -0.8
1,774,575 - PGA1_c16980 0.40 +0.6
1,774,575 - PGA1_c16980 0.40 +1.2
1,774,632 + PGA1_c16980 0.46 -0.0
1,774,633 - PGA1_c16980 0.46 -0.2
1,774,688 + PGA1_c16980 0.53 -0.2
1,774,713 + PGA1_c16980 0.55 +0.9
1,774,723 + PGA1_c16980 0.56 +0.7
1,774,731 - PGA1_c16980 0.57 -0.1
1,774,731 - PGA1_c16980 0.57 -0.8
1,774,735 + PGA1_c16980 0.58 +0.4
1,774,748 - PGA1_c16980 0.59 +1.1
1,774,796 + PGA1_c16980 0.65 -0.5
1,774,796 + PGA1_c16980 0.65 -0.2
1,774,804 - PGA1_c16980 0.65 +0.5
1,774,804 - PGA1_c16980 0.65 +0.5

Or see this region's nucleotide sequence