Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15270 and PGA1_c15280 are separated by 94 nucleotides PGA1_c15280 and PGA1_c15290 are separated by 80 nucleotides PGA1_c15290 and PGA1_c15300 are separated by 116 nucleotides
PGA1_c15270: PGA1_c15270 - alanyl-tRNA synthetase AlaS, at 1,590,587 to 1,593,238
_c15270
PGA1_c15280: PGA1_c15280 - Uncharacterized conserved protein, at 1,593,333 to 1,593,620
_c15280
PGA1_c15290: PGA1_c15290 - Lactoylglutathione lyase and related lyases, at 1,593,701 to 1,594,282
_c15290
PGA1_c15300: PGA1_c15300 - GTP-binding protein TypA, at 1,594,399 to 1,596,219
_c15300
Position (kb)
1593
1594
1595 Strain fitness (log2 ratio)
-1
0
1 at 1593.238 kb on + strand at 1593.314 kb on + strand at 1593.519 kb on - strand, within PGA1_c15280 at 1593.558 kb on + strand, within PGA1_c15280 at 1593.558 kb on + strand, within PGA1_c15280 at 1593.566 kb on - strand, within PGA1_c15280 at 1593.573 kb on - strand, within PGA1_c15280 at 1593.588 kb on - strand, within PGA1_c15280 at 1593.641 kb on + strand at 1593.649 kb on - strand at 1593.718 kb on - strand at 1593.718 kb on - strand at 1593.718 kb on - strand at 1593.732 kb on + strand at 1593.788 kb on + strand, within PGA1_c15290 at 1593.836 kb on + strand, within PGA1_c15290 at 1594.036 kb on - strand, within PGA1_c15290 at 1594.085 kb on + strand, within PGA1_c15290 at 1594.238 kb on + strand at 1594.267 kb on + strand at 1594.268 kb on - strand at 1594.275 kb on - strand at 1594.286 kb on + strand at 1594.318 kb on + strand at 1594.318 kb on + strand at 1594.326 kb on - strand at 1594.326 kb on - strand at 1594.416 kb on - strand at 1594.437 kb on + strand at 1594.709 kb on - strand, within PGA1_c15300 at 1594.724 kb on - strand, within PGA1_c15300 at 1594.777 kb on + strand, within PGA1_c15300 at 1594.824 kb on - strand, within PGA1_c15300 at 1594.903 kb on + strand, within PGA1_c15300 at 1594.922 kb on + strand, within PGA1_c15300 at 1594.943 kb on + strand, within PGA1_c15300 at 1594.943 kb on + strand, within PGA1_c15300 at 1594.951 kb on - strand, within PGA1_c15300 at 1595.233 kb on + strand, within PGA1_c15300 at 1595.241 kb on - strand, within PGA1_c15300
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 1,593,238 + +0.3 1,593,314 + -0.2 1,593,519 - PGA1_c15280 0.65 -0.1 1,593,558 + PGA1_c15280 0.78 +0.8 1,593,558 + PGA1_c15280 0.78 -0.9 1,593,566 - PGA1_c15280 0.81 +0.6 1,593,573 - PGA1_c15280 0.83 -0.4 1,593,588 - PGA1_c15280 0.89 -0.6 1,593,641 + -0.3 1,593,649 - -0.2 1,593,718 - +0.3 1,593,718 - +0.1 1,593,718 - +0.1 1,593,732 + +0.2 1,593,788 + PGA1_c15290 0.15 -0.5 1,593,836 + PGA1_c15290 0.23 -0.8 1,594,036 - PGA1_c15290 0.58 +0.3 1,594,085 + PGA1_c15290 0.66 -0.4 1,594,238 + +0.4 1,594,267 + -1.4 1,594,268 - +0.0 1,594,275 - +0.6 1,594,286 + +0.0 1,594,318 + +0.2 1,594,318 + +0.2 1,594,326 - +0.1 1,594,326 - +0.3 1,594,416 - +0.3 1,594,437 + +0.3 1,594,709 - PGA1_c15300 0.17 -0.7 1,594,724 - PGA1_c15300 0.18 -0.4 1,594,777 + PGA1_c15300 0.21 +0.2 1,594,824 - PGA1_c15300 0.23 -0.3 1,594,903 + PGA1_c15300 0.28 +0.6 1,594,922 + PGA1_c15300 0.29 -1.2 1,594,943 + PGA1_c15300 0.30 -1.0 1,594,943 + PGA1_c15300 0.30 +0.8 1,594,951 - PGA1_c15300 0.30 +0.1 1,595,233 + PGA1_c15300 0.46 -1.1 1,595,241 - PGA1_c15300 0.46 +0.3
Or see this region's nucleotide sequence