Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15030 and PGA1_c15040 are separated by 49 nucleotides PGA1_c15040 and PGA1_c15050 are separated by 83 nucleotides PGA1_c15050 and PGA1_c15060 overlap by 4 nucleotides
PGA1_c15030: PGA1_c15030 - phospholipase-like protein, at 1,562,402 to 1,563,430
_c15030
PGA1_c15040: PGA1_c15040 - Uncharacterized conserved protein, at 1,563,480 to 1,564,172
_c15040
PGA1_c15050: PGA1_c15050 - Uncharacterized enzyme involved in pigment biosynthesis, at 1,564,256 to 1,565,170
_c15050
PGA1_c15060: PGA1_c15060 - carbohydrate kinase, PfkB family, at 1,565,167 to 1,566,126
_c15060
Position (kb)
1564
1565
1566 Strain fitness (log2 ratio)
-1
0
1
2 at 1563.289 kb on - strand, within PGA1_c15030 at 1563.471 kb on - strand at 1563.471 kb on - strand at 1563.481 kb on - strand at 1563.512 kb on + strand at 1563.554 kb on - strand, within PGA1_c15040 at 1563.574 kb on + strand, within PGA1_c15040 at 1563.604 kb on + strand, within PGA1_c15040 at 1563.612 kb on - strand, within PGA1_c15040 at 1563.847 kb on + strand, within PGA1_c15040 at 1563.847 kb on + strand, within PGA1_c15040 at 1563.849 kb on + strand, within PGA1_c15040 at 1563.855 kb on - strand, within PGA1_c15040 at 1563.876 kb on + strand, within PGA1_c15040 at 1563.925 kb on + strand, within PGA1_c15040 at 1564.016 kb on + strand, within PGA1_c15040 at 1564.218 kb on - strand at 1564.228 kb on - strand at 1564.254 kb on - strand at 1564.261 kb on + strand at 1564.269 kb on - strand at 1564.271 kb on + strand at 1564.461 kb on + strand, within PGA1_c15050 at 1564.596 kb on - strand, within PGA1_c15050 at 1564.711 kb on + strand, within PGA1_c15050 at 1564.926 kb on + strand, within PGA1_c15050 at 1564.926 kb on + strand, within PGA1_c15050 at 1564.934 kb on - strand, within PGA1_c15050 at 1564.981 kb on - strand, within PGA1_c15050 at 1565.042 kb on - strand, within PGA1_c15050 at 1565.042 kb on - strand, within PGA1_c15050 at 1565.278 kb on + strand, within PGA1_c15060 at 1565.490 kb on + strand, within PGA1_c15060 at 1565.522 kb on - strand, within PGA1_c15060 at 1565.593 kb on - strand, within PGA1_c15060 at 1565.657 kb on - strand, within PGA1_c15060 at 1565.699 kb on - strand, within PGA1_c15060 at 1565.798 kb on + strand, within PGA1_c15060 at 1565.820 kb on + strand, within PGA1_c15060 at 1565.828 kb on - strand, within PGA1_c15060 at 1565.847 kb on + strand, within PGA1_c15060 at 1565.898 kb on + strand, within PGA1_c15060 at 1565.926 kb on + strand, within PGA1_c15060 at 1566.021 kb on + strand, within PGA1_c15060 at 1566.029 kb on - strand, within PGA1_c15060 at 1566.029 kb on - strand, within PGA1_c15060 at 1566.049 kb on - strand at 1566.068 kb on + strand at 1566.078 kb on - strand at 1566.088 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 1,563,289 - PGA1_c15030 0.86 -0.2 1,563,471 - -1.2 1,563,471 - +2.7 1,563,481 - +0.5 1,563,512 + +0.4 1,563,554 - PGA1_c15040 0.11 +0.2 1,563,574 + PGA1_c15040 0.14 +0.2 1,563,604 + PGA1_c15040 0.18 +0.0 1,563,612 - PGA1_c15040 0.19 +0.9 1,563,847 + PGA1_c15040 0.53 +0.1 1,563,847 + PGA1_c15040 0.53 +0.3 1,563,849 + PGA1_c15040 0.53 +1.0 1,563,855 - PGA1_c15040 0.54 +0.6 1,563,876 + PGA1_c15040 0.57 +0.5 1,563,925 + PGA1_c15040 0.64 +0.1 1,564,016 + PGA1_c15040 0.77 +0.7 1,564,218 - +0.2 1,564,228 - +1.3 1,564,254 - +0.6 1,564,261 + +1.3 1,564,269 - -0.7 1,564,271 + -0.6 1,564,461 + PGA1_c15050 0.22 +0.5 1,564,596 - PGA1_c15050 0.37 +0.0 1,564,711 + PGA1_c15050 0.50 +1.9 1,564,926 + PGA1_c15050 0.73 +0.2 1,564,926 + PGA1_c15050 0.73 +1.8 1,564,934 - PGA1_c15050 0.74 -0.2 1,564,981 - PGA1_c15050 0.79 -0.8 1,565,042 - PGA1_c15050 0.86 -0.1 1,565,042 - PGA1_c15050 0.86 +0.2 1,565,278 + PGA1_c15060 0.12 -0.1 1,565,490 + PGA1_c15060 0.34 +0.2 1,565,522 - PGA1_c15060 0.37 -0.7 1,565,593 - PGA1_c15060 0.44 +1.2 1,565,657 - PGA1_c15060 0.51 -0.0 1,565,699 - PGA1_c15060 0.55 +0.3 1,565,798 + PGA1_c15060 0.66 +0.7 1,565,820 + PGA1_c15060 0.68 +0.2 1,565,828 - PGA1_c15060 0.69 -0.3 1,565,847 + PGA1_c15060 0.71 +0.7 1,565,898 + PGA1_c15060 0.76 +0.4 1,565,926 + PGA1_c15060 0.79 -0.2 1,566,021 + PGA1_c15060 0.89 +0.5 1,566,029 - PGA1_c15060 0.90 +0.2 1,566,029 - PGA1_c15060 0.90 +0.6 1,566,049 - -0.2 1,566,068 + +0.6 1,566,078 - +0.5 1,566,088 + +0.1
Or see this region's nucleotide sequence