Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3150

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3149 and DvMF_3150 are separated by 263 nucleotidesDvMF_3150 and DvMF_3151 are separated by 559 nucleotides DvMF_3149: DvMF_3149 - acetylornithine aminotransferase (RefSeq), at 3,973,734 to 3,974,942 _3149 DvMF_3150: DvMF_3150 - hypothetical protein (RefSeq), at 3,975,206 to 3,975,556 _3150 DvMF_3151: DvMF_3151 - ABC transporter related (RefSeq), at 3,976,116 to 3,976,844 _3151 Position (kb) 3975 3976Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3974.396 kb on + strand, within DvMF_3149at 3974.396 kb on + strand, within DvMF_3149at 3974.429 kb on - strand, within DvMF_3149at 3974.449 kb on - strand, within DvMF_3149at 3974.613 kb on + strand, within DvMF_3149at 3974.751 kb on - strand, within DvMF_3149at 3974.774 kb on - strand, within DvMF_3149at 3975.111 kb on + strandat 3975.278 kb on + strand, within DvMF_3150at 3976.193 kb on + strand, within DvMF_3151at 3976.246 kb on + strandat 3976.287 kb on + strand, within DvMF_3151

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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3,974,396 + DvMF_3149 0.55 -1.9
3,974,396 + DvMF_3149 0.55 -2.1
3,974,429 - DvMF_3149 0.57 +0.3
3,974,449 - DvMF_3149 0.59 -4.2
3,974,613 + DvMF_3149 0.73 -2.4
3,974,751 - DvMF_3149 0.84 -2.1
3,974,774 - DvMF_3149 0.86 -4.4
3,975,111 + -0.8
3,975,278 + DvMF_3150 0.21 -2.5
3,976,193 + DvMF_3151 0.11 -1.0
3,976,246 + +2.0
3,976,287 + DvMF_3151 0.23 -0.3

Or see this region's nucleotide sequence