Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3149

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3147 and DvMF_3148 are separated by 148 nucleotidesDvMF_3148 and DvMF_3149 are separated by 92 nucleotidesDvMF_3149 and DvMF_3150 are separated by 263 nucleotides DvMF_3147: DvMF_3147 - alpha-glucan phosphorylase (RefSeq), at 3,970,413 to 3,972,983 _3147 DvMF_3148: DvMF_3148 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (RefSeq), at 3,973,132 to 3,973,641 _3148 DvMF_3149: DvMF_3149 - acetylornithine aminotransferase (RefSeq), at 3,973,734 to 3,974,942 _3149 DvMF_3150: DvMF_3150 - hypothetical protein (RefSeq), at 3,975,206 to 3,975,556 _3150 Position (kb) 3973 3974 3975Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3972.782 kb on + strandat 3972.782 kb on + strandat 3972.937 kb on + strandat 3973.408 kb on - strand, within DvMF_3148at 3974.009 kb on + strand, within DvMF_3149at 3974.026 kb on + strand, within DvMF_3149at 3974.060 kb on + strand, within DvMF_3149at 3974.098 kb on - strand, within DvMF_3149at 3974.171 kb on - strand, within DvMF_3149at 3974.200 kb on - strand, within DvMF_3149at 3974.200 kb on - strand, within DvMF_3149at 3974.205 kb on - strand, within DvMF_3149at 3974.396 kb on + strand, within DvMF_3149at 3974.396 kb on + strand, within DvMF_3149at 3974.429 kb on - strand, within DvMF_3149at 3974.449 kb on - strand, within DvMF_3149at 3974.613 kb on + strand, within DvMF_3149at 3974.751 kb on - strand, within DvMF_3149at 3974.774 kb on - strand, within DvMF_3149at 3975.111 kb on + strandat 3975.278 kb on + strand, within DvMF_3150

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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3,972,782 + -2.8
3,972,782 + +0.2
3,972,937 + +0.0
3,973,408 - DvMF_3148 0.54 -0.6
3,974,009 + DvMF_3149 0.23 -2.1
3,974,026 + DvMF_3149 0.24 -4.9
3,974,060 + DvMF_3149 0.27 -2.6
3,974,098 - DvMF_3149 0.30 -4.0
3,974,171 - DvMF_3149 0.36 -3.6
3,974,200 - DvMF_3149 0.39 -4.8
3,974,200 - DvMF_3149 0.39 -6.0
3,974,205 - DvMF_3149 0.39 -2.0
3,974,396 + DvMF_3149 0.55 -1.9
3,974,396 + DvMF_3149 0.55 -2.1
3,974,429 - DvMF_3149 0.57 +0.3
3,974,449 - DvMF_3149 0.59 -4.2
3,974,613 + DvMF_3149 0.73 -2.4
3,974,751 - DvMF_3149 0.84 -2.1
3,974,774 - DvMF_3149 0.86 -4.4
3,975,111 + -0.8
3,975,278 + DvMF_3150 0.21 -2.5

Or see this region's nucleotide sequence