Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3052 and DvMF_3053 overlap by 8 nucleotides DvMF_3053 and DvMF_3054 overlap by 4 nucleotides DvMF_3054 and DvMF_3055 are separated by 122 nucleotides
DvMF_3052: DvMF_3052 - putative molybdenum ABC transporter, solute-binding protein (RefSeq), at 3,853,604 to 3,854,464
_3052
DvMF_3053: DvMF_3053 - 4Fe-4S ferredoxin, iron-sulfur binding domain protein (RefSeq), at 3,854,457 to 3,855,275
_3053
DvMF_3054: DvMF_3054 - Radical SAM domain protein (RefSeq), at 3,855,272 to 3,856,249
_3054
DvMF_3055: DvMF_3055 - peptide methionine sulfoxide reductase (RefSeq), at 3,856,372 to 3,857,100
_3055
Position (kb)
3855
3856
3857 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3854.505 kb on + strand at 3854.702 kb on + strand, within DvMF_3053 at 3854.702 kb on + strand, within DvMF_3053 at 3854.702 kb on + strand, within DvMF_3053 at 3854.710 kb on - strand, within DvMF_3053 at 3854.809 kb on - strand, within DvMF_3053 at 3855.109 kb on - strand, within DvMF_3053 at 3855.133 kb on - strand, within DvMF_3053 at 3855.231 kb on - strand at 3855.378 kb on + strand, within DvMF_3054 at 3855.532 kb on + strand, within DvMF_3054 at 3855.833 kb on + strand, within DvMF_3054 at 3856.109 kb on - strand, within DvMF_3054 at 3856.109 kb on - strand, within DvMF_3054 at 3856.219 kb on + strand at 3856.385 kb on + strand at 3856.385 kb on + strand at 3856.711 kb on + strand, within DvMF_3055 at 3856.730 kb on + strand, within DvMF_3055 at 3856.749 kb on + strand, within DvMF_3055 at 3856.757 kb on - strand, within DvMF_3055 at 3857.025 kb on + strand, within DvMF_3055 at 3857.033 kb on - strand at 3857.033 kb on - strand at 3857.245 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml remove 3,854,505 + -0.6 3,854,702 + DvMF_3053 0.30 -1.3 3,854,702 + DvMF_3053 0.30 -0.9 3,854,702 + DvMF_3053 0.30 -0.4 3,854,710 - DvMF_3053 0.31 +0.1 3,854,809 - DvMF_3053 0.43 -1.3 3,855,109 - DvMF_3053 0.80 -0.6 3,855,133 - DvMF_3053 0.83 -0.5 3,855,231 - -0.5 3,855,378 + DvMF_3054 0.11 -2.5 3,855,532 + DvMF_3054 0.27 -0.4 3,855,833 + DvMF_3054 0.57 -0.6 3,856,109 - DvMF_3054 0.86 -2.3 3,856,109 - DvMF_3054 0.86 -3.7 3,856,219 + -0.7 3,856,385 + +0.5 3,856,385 + -1.1 3,856,711 + DvMF_3055 0.47 -1.0 3,856,730 + DvMF_3055 0.49 -0.4 3,856,749 + DvMF_3055 0.52 -0.3 3,856,757 - DvMF_3055 0.53 -0.3 3,857,025 + DvMF_3055 0.90 -1.2 3,857,033 - -0.4 3,857,033 - -1.8 3,857,245 - -0.9
Or see this region's nucleotide sequence