Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2972

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2971 and DvMF_2972 are separated by 274 nucleotidesDvMF_2972 and DvMF_2973 are separated by 336 nucleotides DvMF_2971: DvMF_2971 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,746,725 to 3,747,585 _2971 DvMF_2972: DvMF_2972 - Glycerophosphodiester phosphodiesterase (RefSeq), at 3,747,860 to 3,748,771 _2972 DvMF_2973: DvMF_2973 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,749,108 to 3,750,070 _2973 Position (kb) 3747 3748 3749Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3747.225 kb on + strand, within DvMF_2971at 3747.281 kb on + strand, within DvMF_2971at 3747.281 kb on + strand, within DvMF_2971at 3747.408 kb on + strand, within DvMF_2971at 3747.416 kb on - strand, within DvMF_2971at 3747.482 kb on + strand, within DvMF_2971at 3747.642 kb on - strandat 3747.797 kb on - strandat 3747.853 kb on + strandat 3747.872 kb on + strandat 3748.166 kb on - strand, within DvMF_2972at 3748.303 kb on - strand, within DvMF_2972at 3748.400 kb on + strand, within DvMF_2972at 3748.524 kb on - strand, within DvMF_2972at 3748.536 kb on - strand, within DvMF_2972at 3748.547 kb on + strand, within DvMF_2972at 3748.747 kb on - strandat 3748.775 kb on - strandat 3748.788 kb on + strandat 3748.920 kb on - strandat 3749.146 kb on - strandat 3749.146 kb on - strandat 3749.208 kb on + strand, within DvMF_2973at 3749.216 kb on - strand, within DvMF_2973at 3749.221 kb on - strand, within DvMF_2973at 3749.381 kb on + strand, within DvMF_2973at 3749.692 kb on + strand, within DvMF_2973at 3749.700 kb on - strand, within DvMF_2973

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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3,747,225 + DvMF_2971 0.58 -1.0
3,747,281 + DvMF_2971 0.65 -0.5
3,747,281 + DvMF_2971 0.65 -2.1
3,747,408 + DvMF_2971 0.79 -1.7
3,747,416 - DvMF_2971 0.80 -3.5
3,747,482 + DvMF_2971 0.88 -5.0
3,747,642 - -0.1
3,747,797 - -0.7
3,747,853 + -0.8
3,747,872 + -0.7
3,748,166 - DvMF_2972 0.34 -1.0
3,748,303 - DvMF_2972 0.49 +0.3
3,748,400 + DvMF_2972 0.59 -2.5
3,748,524 - DvMF_2972 0.73 -0.8
3,748,536 - DvMF_2972 0.74 -0.5
3,748,547 + DvMF_2972 0.75 -0.6
3,748,747 - -0.3
3,748,775 - -0.5
3,748,788 + -2.3
3,748,920 - -0.6
3,749,146 - -1.0
3,749,146 - -1.3
3,749,208 + DvMF_2973 0.10 -0.7
3,749,216 - DvMF_2973 0.11 -2.8
3,749,221 - DvMF_2973 0.12 -0.6
3,749,381 + DvMF_2973 0.28 -1.7
3,749,692 + DvMF_2973 0.61 -0.5
3,749,700 - DvMF_2973 0.61 -1.5

Or see this region's nucleotide sequence