Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2926 and garR are separated by 422 nucleotides garR and DvMF_2928 are separated by 79 nucleotides
DvMF_2926: DvMF_2926 - beta-lactamase domain protein (RefSeq), at 3,696,045 to 3,697,706
_2926
DvMF_2927: garR - tartronate semialdehyde reductase (RefSeq), at 3,698,129 to 3,699,028
garR
DvMF_2928: DvMF_2928 - Methicillin resistance protein (RefSeq), at 3,699,108 to 3,700,340
_2928
Position (kb)
3698
3699
3700 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3697.270 kb on - strand, within DvMF_2926 at 3697.355 kb on + strand, within DvMF_2926 at 3697.453 kb on + strand, within DvMF_2926 at 3697.453 kb on + strand, within DvMF_2926 at 3697.680 kb on + strand at 3697.731 kb on + strand at 3697.757 kb on + strand at 3697.967 kb on - strand at 3698.126 kb on - strand at 3698.152 kb on + strand at 3698.395 kb on + strand, within garR at 3698.606 kb on - strand, within garR at 3698.818 kb on + strand, within garR at 3698.961 kb on + strand at 3698.969 kb on - strand at 3699.038 kb on - strand at 3699.076 kb on + strand at 3699.203 kb on - strand at 3699.296 kb on - strand, within DvMF_2928 at 3699.323 kb on - strand, within DvMF_2928 at 3699.346 kb on - strand, within DvMF_2928 at 3699.352 kb on + strand, within DvMF_2928 at 3699.352 kb on + strand, within DvMF_2928 at 3699.392 kb on + strand, within DvMF_2928 at 3699.526 kb on - strand, within DvMF_2928 at 3699.562 kb on - strand, within DvMF_2928 at 3699.572 kb on + strand, within DvMF_2928 at 3699.651 kb on - strand, within DvMF_2928 at 3699.704 kb on + strand, within DvMF_2928 at 3699.712 kb on - strand, within DvMF_2928 at 3699.798 kb on - strand, within DvMF_2928 at 3699.849 kb on + strand, within DvMF_2928 at 3699.857 kb on - strand, within DvMF_2928 at 3699.869 kb on + strand, within DvMF_2928 at 3699.976 kb on - strand, within DvMF_2928
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml remove 3,697,270 - DvMF_2926 0.74 -1.7 3,697,355 + DvMF_2926 0.79 -0.3 3,697,453 + DvMF_2926 0.85 -3.7 3,697,453 + DvMF_2926 0.85 -0.7 3,697,680 + -2.8 3,697,731 + -4.3 3,697,757 + -3.4 3,697,967 - -1.1 3,698,126 - -0.4 3,698,152 + -0.5 3,698,395 + garR DvMF_2927 0.30 -3.5 3,698,606 - garR DvMF_2927 0.53 -0.9 3,698,818 + garR DvMF_2927 0.77 -0.5 3,698,961 + +0.1 3,698,969 - -0.2 3,699,038 - -0.8 3,699,076 + -0.5 3,699,203 - -0.6 3,699,296 - DvMF_2928 0.15 -0.2 3,699,323 - DvMF_2928 0.17 -0.9 3,699,346 - DvMF_2928 0.19 -1.0 3,699,352 + DvMF_2928 0.20 -0.5 3,699,352 + DvMF_2928 0.20 -1.1 3,699,392 + DvMF_2928 0.23 -0.0 3,699,526 - DvMF_2928 0.34 -0.9 3,699,562 - DvMF_2928 0.37 -3.0 3,699,572 + DvMF_2928 0.38 -0.8 3,699,651 - DvMF_2928 0.44 +0.1 3,699,704 + DvMF_2928 0.48 -0.6 3,699,712 - DvMF_2928 0.49 -0.8 3,699,798 - DvMF_2928 0.56 -0.5 3,699,849 + DvMF_2928 0.60 -1.5 3,699,857 - DvMF_2928 0.61 -0.6 3,699,869 + DvMF_2928 0.62 -0.4 3,699,976 - DvMF_2928 0.70 -1.1
Or see this region's nucleotide sequence