Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2841 and DvMF_2842 are separated by 219 nucleotides DvMF_2842 and DvMF_2843 are separated by 179 nucleotides DvMF_2843 and DvMF_2844 are separated by 19 nucleotides
DvMF_2841: DvMF_2841 - response regulator receiver protein (RefSeq), at 3,589,572 to 3,590,009
_2841
DvMF_2842: DvMF_2842 - hypothetical protein (RefSeq), at 3,590,229 to 3,590,525
_2842
DvMF_2843: DvMF_2843 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,590,705 to 3,592,348
_2843
DvMF_2844: DvMF_2844 - histidine kinase (RefSeq), at 3,592,368 to 3,594,029
_2844
Position (kb)
3590
3591
3592
3593 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3589.717 kb on + strand, within DvMF_2841 at 3589.817 kb on - strand, within DvMF_2841 at 3589.820 kb on - strand, within DvMF_2841 at 3590.198 kb on + strand at 3590.242 kb on + strand at 3590.439 kb on - strand, within DvMF_2842 at 3590.451 kb on - strand, within DvMF_2842 at 3590.454 kb on + strand, within DvMF_2842 at 3590.471 kb on + strand, within DvMF_2842 at 3590.511 kb on - strand at 3590.539 kb on - strand at 3590.875 kb on + strand, within DvMF_2843 at 3590.883 kb on - strand, within DvMF_2843 at 3590.942 kb on - strand, within DvMF_2843 at 3590.978 kb on - strand, within DvMF_2843 at 3591.011 kb on + strand, within DvMF_2843 at 3591.054 kb on + strand, within DvMF_2843 at 3591.300 kb on + strand, within DvMF_2843 at 3591.390 kb on + strand, within DvMF_2843 at 3591.467 kb on + strand, within DvMF_2843 at 3591.573 kb on + strand, within DvMF_2843 at 3591.581 kb on - strand, within DvMF_2843 at 3591.715 kb on - strand, within DvMF_2843 at 3591.746 kb on - strand, within DvMF_2843 at 3591.753 kb on + strand, within DvMF_2843 at 3591.768 kb on + strand, within DvMF_2843 at 3591.781 kb on - strand, within DvMF_2843 at 3591.790 kb on + strand, within DvMF_2843 at 3592.407 kb on - strand at 3592.412 kb on - strand at 3592.532 kb on + strand at 3592.584 kb on + strand, within DvMF_2844 at 3593.059 kb on + strand, within DvMF_2844 at 3593.170 kb on - strand, within DvMF_2844 at 3593.181 kb on + strand, within DvMF_2844 at 3593.195 kb on + strand, within DvMF_2844
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml remove 3,589,717 + DvMF_2841 0.33 -0.5 3,589,817 - DvMF_2841 0.56 +0.7 3,589,820 - DvMF_2841 0.57 -1.2 3,590,198 + -0.1 3,590,242 + +0.1 3,590,439 - DvMF_2842 0.71 +0.6 3,590,451 - DvMF_2842 0.75 +0.7 3,590,454 + DvMF_2842 0.76 +0.2 3,590,471 + DvMF_2842 0.81 +1.3 3,590,511 - +0.2 3,590,539 - +0.6 3,590,875 + DvMF_2843 0.10 +0.4 3,590,883 - DvMF_2843 0.11 +0.3 3,590,942 - DvMF_2843 0.14 +1.1 3,590,978 - DvMF_2843 0.17 +0.8 3,591,011 + DvMF_2843 0.19 +0.6 3,591,054 + DvMF_2843 0.21 +0.2 3,591,300 + DvMF_2843 0.36 -0.1 3,591,390 + DvMF_2843 0.42 +1.2 3,591,467 + DvMF_2843 0.46 +1.2 3,591,573 + DvMF_2843 0.53 +0.6 3,591,581 - DvMF_2843 0.53 +0.4 3,591,715 - DvMF_2843 0.61 +0.4 3,591,746 - DvMF_2843 0.63 -4.2 3,591,753 + DvMF_2843 0.64 +0.4 3,591,768 + DvMF_2843 0.65 +0.8 3,591,781 - DvMF_2843 0.65 +0.3 3,591,790 + DvMF_2843 0.66 +0.9 3,592,407 - +1.5 3,592,412 - +0.7 3,592,532 + +0.4 3,592,584 + DvMF_2844 0.13 -0.5 3,593,059 + DvMF_2844 0.42 +0.3 3,593,170 - DvMF_2844 0.48 +0.5 3,593,181 + DvMF_2844 0.49 -0.9 3,593,195 + DvMF_2844 0.50 +0.4
Or see this region's nucleotide sequence