Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2814
Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | MoLS4 with D-Cycloserine 0.0625 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 3,557,293 | + | DvMF_2813 | 0.48 | -1.7 | |
| 3,557,306 | - | DvMF_2813 | 0.49 | -0.5 | |
| 3,557,361 | - | DvMF_2813 | 0.54 | -0.7 | |
| 3,557,371 | - | DvMF_2813 | 0.55 | -0.9 | |
| 3,557,454 | + | DvMF_2813 | 0.63 | -1.4 | |
| 3,557,487 | + | DvMF_2813 | 0.66 | -0.2 | |
| 3,557,504 | - | DvMF_2813 | 0.67 | -0.3 | |
| 3,557,576 | - | +2.0 | |||
| 3,557,605 | + | DvMF_2813 | 0.77 | -0.7 | |
| 3,557,613 | - | DvMF_2813 | 0.78 | -0.5 | |
| 3,557,750 | - | +1.8 | |||
| 3,558,145 | - | -0.6 | |||
| 3,558,169 | + | -0.1 | |||
| 3,558,257 | + | -3.1 | |||
| 3,558,330 | + | -1.5 | |||
| 3,558,798 | + | hisD | DvMF_2814 | 0.43 | -0.7 |
| 3,558,803 | + | hisD | DvMF_2814 | 0.43 | -2.1 |
| 3,558,822 | + | hisD | DvMF_2814 | 0.44 | -2.9 |
| 3,559,041 | - | hisD | DvMF_2814 | 0.61 | -3.6 |
| 3,559,339 | + | hisD | DvMF_2814 | 0.84 | -1.3 |
| 3,559,570 | - | +0.9 | |||
| 3,559,896 | + | DvMF_2815 | 0.18 | +0.6 | |
| 3,560,043 | + | DvMF_2815 | 0.35 | -1.0 | |
| 3,560,132 | - | DvMF_2815 | 0.45 | -1.6 | |
| 3,560,313 | - | DvMF_2815 | 0.65 | -2.2 |
Or see this region's nucleotide sequence