Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2798

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2796 and DvMF_2797 are separated by 0 nucleotidesDvMF_2797 and DvMF_2798 are separated by 64 nucleotidesDvMF_2798 and DvMF_2799 are separated by 315 nucleotidesDvMF_2799 and DvMF_2800 are separated by 155 nucleotides DvMF_2796: DvMF_2796 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 3,539,711 to 3,541,453 _2796 DvMF_2797: DvMF_2797 - hypothetical protein (RefSeq), at 3,541,454 to 3,542,044 _2797 DvMF_2798: DvMF_2798 - transcription activator effector binding (RefSeq), at 3,542,109 to 3,542,579 _2798 DvMF_2799: DvMF_2799 - histone family protein DNA-binding protein (RefSeq), at 3,542,895 to 3,543,170 _2799 DvMF_2800: DvMF_2800 - hypothetical protein (RefSeq), at 3,543,326 to 3,543,733 _2800 Position (kb) 3542 3543Strain fitness (log2 ratio) -2 -1 0 1at 3541.159 kb on - strand, within DvMF_2796at 3541.364 kb on - strandat 3541.670 kb on - strand, within DvMF_2797at 3541.726 kb on + strand, within DvMF_2797at 3541.946 kb on - strand, within DvMF_2797at 3542.006 kb on - strandat 3542.041 kb on + strandat 3542.122 kb on - strandat 3542.137 kb on - strandat 3542.244 kb on - strand, within DvMF_2798at 3542.600 kb on - strandat 3542.788 kb on + strandat 3542.830 kb on - strandat 3543.043 kb on + strand, within DvMF_2799at 3543.361 kb on - strandat 3543.383 kb on + strand, within DvMF_2800at 3543.435 kb on + strand, within DvMF_2800at 3543.440 kb on + strand, within DvMF_2800

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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3,541,159 - DvMF_2796 0.83 -1.8
3,541,364 - -1.5
3,541,670 - DvMF_2797 0.37 -0.1
3,541,726 + DvMF_2797 0.46 -2.4
3,541,946 - DvMF_2797 0.83 -0.8
3,542,006 - -0.4
3,542,041 + -0.8
3,542,122 - -0.9
3,542,137 - +0.6
3,542,244 - DvMF_2798 0.29 -0.0
3,542,600 - +0.7
3,542,788 + -0.9
3,542,830 - -1.3
3,543,043 + DvMF_2799 0.54 -0.6
3,543,361 - -2.0
3,543,383 + DvMF_2800 0.14 -0.1
3,543,435 + DvMF_2800 0.27 -0.8
3,543,440 + DvMF_2800 0.28 -1.3

Or see this region's nucleotide sequence