Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2757

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpurT and tgt are separated by 348 nucleotidestgt and DvMF_2758 are separated by 312 nucleotides DvMF_2756: purT - phosphoribosylglycinamide formyltransferase 2 (RefSeq), at 3,481,441 to 3,482,622 purT DvMF_2757: tgt - queuine tRNA-ribosyltransferase (RefSeq), at 3,482,971 to 3,484,131 tgt DvMF_2758: DvMF_2758 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 3,484,444 to 3,486,540 _2758 Position (kb) 3482 3483 3484 3485Strain fitness (log2 ratio) -2 -1 0 1at 3482.242 kb on - strand, within purTat 3482.703 kb on - strandat 3482.831 kb on + strandat 3482.839 kb on - strandat 3482.883 kb on + strandat 3482.924 kb on + strandat 3483.092 kb on + strand, within tgtat 3483.126 kb on + strand, within tgtat 3483.378 kb on + strand, within tgtat 3483.471 kb on + strand, within tgtat 3483.471 kb on + strand, within tgtat 3483.479 kb on - strand, within tgtat 3483.585 kb on + strand, within tgtat 3483.965 kb on + strand, within tgtat 3484.071 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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3,482,242 - purT DvMF_2756 0.68 -0.6
3,482,703 - -0.7
3,482,831 + -1.5
3,482,839 - -0.1
3,482,883 + -1.9
3,482,924 + -1.5
3,483,092 + tgt DvMF_2757 0.10 -0.9
3,483,126 + tgt DvMF_2757 0.13 -0.9
3,483,378 + tgt DvMF_2757 0.35 -2.2
3,483,471 + tgt DvMF_2757 0.43 +0.2
3,483,471 + tgt DvMF_2757 0.43 -0.8
3,483,479 - tgt DvMF_2757 0.44 -0.8
3,483,585 + tgt DvMF_2757 0.53 -0.8
3,483,965 + tgt DvMF_2757 0.86 +0.5
3,484,071 + +0.4

Or see this region's nucleotide sequence