Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2575

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2574 and DvMF_2575 are separated by 351 nucleotidesDvMF_2575 and DvMF_2576 are separated by 21 nucleotides DvMF_2574: DvMF_2574 - Osmosensitive K channel His kinase sensor (RefSeq), at 3,254,835 to 3,255,962 _2574 DvMF_2575: DvMF_2575 - potassium-transporting ATPase, C subunit (RefSeq), at 3,256,314 to 3,256,907 _2575 DvMF_2576: DvMF_2576 - K+-transporting ATPase, B subunit (RefSeq), at 3,256,929 to 3,259,025 _2576 Position (kb) 3256 3257Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3255.355 kb on - strand, within DvMF_2574at 3255.392 kb on - strand, within DvMF_2574at 3255.461 kb on + strand, within DvMF_2574at 3255.721 kb on - strand, within DvMF_2574at 3255.761 kb on + strand, within DvMF_2574at 3255.761 kb on + strand, within DvMF_2574at 3255.761 kb on + strand, within DvMF_2574at 3255.846 kb on - strand, within DvMF_2574at 3255.904 kb on + strandat 3255.966 kb on + strandat 3256.039 kb on + strandat 3256.202 kb on + strandat 3256.745 kb on + strand, within DvMF_2575at 3256.809 kb on + strand, within DvMF_2575at 3256.822 kb on + strand, within DvMF_2575at 3256.830 kb on - strand, within DvMF_2575at 3256.859 kb on - strandat 3256.916 kb on + strandat 3256.937 kb on + strandat 3256.948 kb on + strandat 3257.018 kb on + strandat 3257.119 kb on + strandat 3257.217 kb on + strand, within DvMF_2576at 3257.240 kb on + strand, within DvMF_2576at 3257.240 kb on + strand, within DvMF_2576at 3257.593 kb on + strand, within DvMF_2576at 3257.601 kb on - strand, within DvMF_2576at 3257.785 kb on + strand, within DvMF_2576at 3257.803 kb on + strand, within DvMF_2576at 3257.829 kb on - strand, within DvMF_2576

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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3,255,355 - DvMF_2574 0.46 -0.1
3,255,392 - DvMF_2574 0.49 -0.0
3,255,461 + DvMF_2574 0.55 -1.4
3,255,721 - DvMF_2574 0.79 +0.2
3,255,761 + DvMF_2574 0.82 -0.6
3,255,761 + DvMF_2574 0.82 -0.5
3,255,761 + DvMF_2574 0.82 -0.2
3,255,846 - DvMF_2574 0.90 -0.6
3,255,904 + -1.9
3,255,966 + -0.8
3,256,039 + -1.4
3,256,202 + -0.7
3,256,745 + DvMF_2575 0.73 -1.1
3,256,809 + DvMF_2575 0.83 -3.2
3,256,822 + DvMF_2575 0.86 -0.7
3,256,830 - DvMF_2575 0.87 -1.0
3,256,859 - -0.5
3,256,916 + -0.3
3,256,937 + -1.7
3,256,948 + -1.2
3,257,018 + -0.2
3,257,119 + -0.5
3,257,217 + DvMF_2576 0.14 -3.8
3,257,240 + DvMF_2576 0.15 -0.7
3,257,240 + DvMF_2576 0.15 -1.1
3,257,593 + DvMF_2576 0.32 -0.7
3,257,601 - DvMF_2576 0.32 -0.3
3,257,785 + DvMF_2576 0.41 -0.4
3,257,803 + DvMF_2576 0.42 -0.4
3,257,829 - DvMF_2576 0.43 +0.9

Or see this region's nucleotide sequence