Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2556
Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoLS4 with D-Cycloserine 0.0625 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,229,620 | + | DvMF_2555 | 0.44 | -0.9 | |
3,229,653 | + | DvMF_2555 | 0.46 | -0.9 | |
3,229,691 | - | DvMF_2555 | 0.49 | -1.3 | |
3,229,700 | - | DvMF_2555 | 0.50 | -2.3 | |
3,229,808 | - | DvMF_2555 | 0.58 | -1.3 | |
3,229,991 | + | DvMF_2555 | 0.72 | -0.1 | |
3,230,004 | + | DvMF_2555 | 0.72 | -0.4 | |
3,230,005 | - | DvMF_2555 | 0.73 | -1.5 | |
3,230,012 | - | DvMF_2555 | 0.73 | -0.7 | |
3,230,074 | + | DvMF_2555 | 0.78 | -0.9 | |
3,230,132 | + | DvMF_2555 | 0.82 | -0.7 | |
3,230,309 | - | -0.8 | |||
3,230,455 | - | -0.9 | |||
3,230,510 | + | -2.0 | |||
3,230,568 | - | DvMF_2556 | 0.15 | -1.4 | |
3,230,880 | - | DvMF_2556 | 0.63 | -1.0 | |
3,230,975 | + | DvMF_2556 | 0.77 | -1.3 | |
3,231,083 | + | -0.7 | |||
3,231,083 | + | -0.9 | |||
3,231,161 | + | -0.8 | |||
3,231,161 | + | -2.8 | |||
3,231,205 | + | -0.5 | |||
3,231,366 | + | DvMF_2557 | 0.16 | -1.0 | |
3,231,634 | + | DvMF_2557 | 0.36 | -1.3 | |
3,231,676 | + | DvMF_2557 | 0.39 | -0.8 | |
3,231,746 | - | DvMF_2557 | 0.44 | -1.2 | |
3,231,836 | + | DvMF_2557 | 0.51 | -1.3 | |
3,231,842 | + | DvMF_2557 | 0.51 | -1.4 | |
3,231,852 | - | DvMF_2557 | 0.52 | -1.4 | |
3,231,852 | - | DvMF_2557 | 0.52 | -1.6 | |
3,231,964 | - | DvMF_2557 | 0.60 | -1.0 |
Or see this region's nucleotide sequence