Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2516

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnusA and DvMF_2516 are separated by 23 nucleotidesDvMF_2516 and DvMF_2517 are separated by 443 nucleotides DvMF_2515: nusA - transcription elongation factor NusA (RefSeq), at 3,171,400 to 3,172,731 nusA DvMF_2516: DvMF_2516 - protein of unknown function DUF150 (RefSeq), at 3,172,755 to 3,173,435 _2516 DvMF_2517: DvMF_2517 - protein of unknown function DUF1078 domain protein (RefSeq), at 3,173,879 to 3,174,658 _2517 Position (kb) 3172 3173 3174Strain fitness (log2 ratio) -3 -2 -1 0 1at 3172.752 kb on + strandat 3172.760 kb on - strandat 3172.927 kb on + strand, within DvMF_2516at 3173.170 kb on - strand, within DvMF_2516at 3173.198 kb on + strand, within DvMF_2516at 3173.390 kb on - strandat 3173.390 kb on - strandat 3173.717 kb on + strandat 3174.290 kb on + strand, within DvMF_2517at 3174.314 kb on + strand, within DvMF_2517at 3174.322 kb on - strand, within DvMF_2517

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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3,172,752 + -0.0
3,172,760 - -0.2
3,172,927 + DvMF_2516 0.25 -3.7
3,173,170 - DvMF_2516 0.61 -3.1
3,173,198 + DvMF_2516 0.65 -2.2
3,173,390 - -2.9
3,173,390 - -0.5
3,173,717 + -0.0
3,174,290 + DvMF_2517 0.53 -0.5
3,174,314 + DvMF_2517 0.56 -0.2
3,174,322 - DvMF_2517 0.57 +0.1

Or see this region's nucleotide sequence