Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2488

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2486 and DvMF_2487 overlap by 4 nucleotidesDvMF_2487 and DvMF_2488 are separated by 5 nucleotidesDvMF_2488 and DvMF_2489 are separated by 169 nucleotides DvMF_2486: DvMF_2486 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,138,605 to 3,139,561 _2486 DvMF_2487: DvMF_2487 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,139,558 to 3,140,505 _2487 DvMF_2488: DvMF_2488 - phosphate binding protein (RefSeq), at 3,140,511 to 3,141,353 _2488 DvMF_2489: DvMF_2489 - diguanylate cyclase (RefSeq), at 3,141,523 to 3,144,033 _2489 Position (kb) 3140 3141 3142Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3139.698 kb on - strand, within DvMF_2487at 3139.725 kb on + strand, within DvMF_2487at 3139.993 kb on + strand, within DvMF_2487at 3140.025 kb on + strand, within DvMF_2487at 3140.025 kb on + strand, within DvMF_2487at 3140.035 kb on - strand, within DvMF_2487at 3140.298 kb on - strand, within DvMF_2487at 3140.340 kb on - strand, within DvMF_2487at 3140.368 kb on + strand, within DvMF_2487at 3140.403 kb on - strand, within DvMF_2487at 3140.487 kb on + strandat 3140.525 kb on - strandat 3140.619 kb on - strand, within DvMF_2488at 3140.754 kb on - strand, within DvMF_2488at 3141.231 kb on + strand, within DvMF_2488at 3141.540 kb on + strandat 3141.540 kb on + strandat 3141.540 kb on + strandat 3141.548 kb on - strandat 3141.548 kb on - strandat 3141.548 kb on - strandat 3141.636 kb on - strandat 3141.701 kb on - strandat 3141.863 kb on + strand, within DvMF_2489at 3141.864 kb on - strand, within DvMF_2489at 3142.177 kb on + strand, within DvMF_2489

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
remove
3,139,698 - DvMF_2487 0.15 -0.8
3,139,725 + DvMF_2487 0.18 -0.1
3,139,993 + DvMF_2487 0.46 -2.9
3,140,025 + DvMF_2487 0.49 -0.3
3,140,025 + DvMF_2487 0.49 -0.8
3,140,035 - DvMF_2487 0.50 -0.8
3,140,298 - DvMF_2487 0.78 -2.1
3,140,340 - DvMF_2487 0.82 -0.8
3,140,368 + DvMF_2487 0.85 -1.0
3,140,403 - DvMF_2487 0.89 -0.8
3,140,487 + -0.8
3,140,525 - -3.5
3,140,619 - DvMF_2488 0.13 -1.4
3,140,754 - DvMF_2488 0.29 -1.2
3,141,231 + DvMF_2488 0.85 -1.9
3,141,540 + -3.1
3,141,540 + +0.7
3,141,540 + -0.7
3,141,548 - +1.0
3,141,548 - +1.6
3,141,548 - +0.7
3,141,636 - -1.9
3,141,701 - -1.7
3,141,863 + DvMF_2489 0.14 -0.8
3,141,864 - DvMF_2489 0.14 -0.2
3,142,177 + DvMF_2489 0.26 -3.9

Or see this region's nucleotide sequence