Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2427

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2426 and DvMF_2427 overlap by 4 nucleotidesDvMF_2427 and DvMF_2428 overlap by 8 nucleotidesDvMF_2428 and DvMF_2429 are separated by 16 nucleotidesDvMF_2429 and DvMF_2430 are separated by 233 nucleotides DvMF_2426: DvMF_2426 - type III secretion outer membrane pore, YscC/HrcC family (RefSeq), at 3,062,464 to 3,064,464 _2426 DvMF_2427: DvMF_2427 - type III secretion apparatus protein, YscD/HrpQ family (RefSeq), at 3,064,461 to 3,066,029 _2427 DvMF_2428: DvMF_2428 - hypothetical protein (RefSeq), at 3,066,022 to 3,066,240 _2428 DvMF_2429: DvMF_2429 - hypothetical protein (RefSeq), at 3,066,257 to 3,066,511 _2429 DvMF_2430: DvMF_2430 - hypothetical protein (RefSeq), at 3,066,745 to 3,067,110 _2430 Position (kb) 3064 3065 3066 3067Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3063.572 kb on + strand, within DvMF_2426at 3063.590 kb on + strand, within DvMF_2426at 3063.598 kb on - strand, within DvMF_2426at 3063.598 kb on - strand, within DvMF_2426at 3063.598 kb on - strand, within DvMF_2426at 3063.598 kb on - strand, within DvMF_2426at 3063.689 kb on + strand, within DvMF_2426at 3063.689 kb on + strand, within DvMF_2426at 3063.689 kb on + strand, within DvMF_2426at 3063.701 kb on + strand, within DvMF_2426at 3063.759 kb on - strand, within DvMF_2426at 3063.800 kb on - strand, within DvMF_2426at 3063.888 kb on - strand, within DvMF_2426at 3064.066 kb on - strand, within DvMF_2426at 3064.128 kb on - strand, within DvMF_2426at 3064.138 kb on - strand, within DvMF_2426at 3064.585 kb on + strandat 3064.881 kb on + strand, within DvMF_2427at 3065.071 kb on - strand, within DvMF_2427at 3065.175 kb on - strand, within DvMF_2427at 3065.264 kb on + strand, within DvMF_2427at 3065.776 kb on - strand, within DvMF_2427at 3066.108 kb on - strand, within DvMF_2428at 3066.319 kb on - strand, within DvMF_2429at 3066.422 kb on + strand, within DvMF_2429at 3066.427 kb on + strand, within DvMF_2429at 3066.435 kb on - strand, within DvMF_2429at 3066.435 kb on - strand, within DvMF_2429at 3066.458 kb on + strand, within DvMF_2429at 3066.514 kb on - strandat 3066.580 kb on + strandat 3066.586 kb on + strandat 3066.793 kb on + strand, within DvMF_2430at 3066.836 kb on - strand, within DvMF_2430at 3066.956 kb on - strand, within DvMF_2430at 3067.004 kb on - strand, within DvMF_2430

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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3,063,572 + DvMF_2426 0.55 -1.3
3,063,590 + DvMF_2426 0.56 -0.0
3,063,598 - DvMF_2426 0.57 -1.3
3,063,598 - DvMF_2426 0.57 -0.6
3,063,598 - DvMF_2426 0.57 -1.1
3,063,598 - DvMF_2426 0.57 -0.8
3,063,689 + DvMF_2426 0.61 -0.2
3,063,689 + DvMF_2426 0.61 -0.8
3,063,689 + DvMF_2426 0.61 -0.3
3,063,701 + DvMF_2426 0.62 +0.3
3,063,759 - DvMF_2426 0.65 -0.3
3,063,800 - DvMF_2426 0.67 -2.2
3,063,888 - DvMF_2426 0.71 -0.6
3,064,066 - DvMF_2426 0.80 -1.5
3,064,128 - DvMF_2426 0.83 -1.1
3,064,138 - DvMF_2426 0.84 -0.3
3,064,585 + +1.1
3,064,881 + DvMF_2427 0.27 -1.5
3,065,071 - DvMF_2427 0.39 -1.7
3,065,175 - DvMF_2427 0.46 -4.0
3,065,264 + DvMF_2427 0.51 -0.4
3,065,776 - DvMF_2427 0.84 -1.5
3,066,108 - DvMF_2428 0.39 -0.3
3,066,319 - DvMF_2429 0.24 -4.4
3,066,422 + DvMF_2429 0.65 -0.6
3,066,427 + DvMF_2429 0.67 -0.5
3,066,435 - DvMF_2429 0.70 -1.0
3,066,435 - DvMF_2429 0.70 -0.7
3,066,458 + DvMF_2429 0.79 -0.3
3,066,514 - -1.1
3,066,580 + -0.2
3,066,586 + -0.1
3,066,793 + DvMF_2430 0.13 -1.2
3,066,836 - DvMF_2430 0.25 -1.0
3,066,956 - DvMF_2430 0.58 +0.5
3,067,004 - DvMF_2430 0.71 -1.3

Or see this region's nucleotide sequence