Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2416

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2415 and DvMF_2416 are separated by 2 nucleotidesDvMF_2416 and DvMF_2417 are separated by 2 nucleotidesDvMF_2417 and DvMF_2418 overlap by 4 nucleotidesDvMF_2418 and DvMF_2419 overlap by 4 nucleotides DvMF_2415: DvMF_2415 - type III secretion protein, HrcV family (RefSeq), at 3,053,406 to 3,055,496 _2415 DvMF_2416: DvMF_2416 - Tetratricopeptide TPR_4 (RefSeq), at 3,055,499 to 3,055,858 _2416 DvMF_2417: DvMF_2417 - hypothetical protein (RefSeq), at 3,055,861 to 3,056,229 _2417 DvMF_2418: DvMF_2418 - type III secretion chaperone SycN (RefSeq), at 3,056,226 to 3,056,627 _2418 DvMF_2419: DvMF_2419 - type III secretion regulator YopN/LcrE/InvE/MxiC (RefSeq), at 3,056,624 to 3,057,763 _2419 Position (kb) 3055 3056Strain fitness (log2 ratio) -3 -2 -1 0 1at 3054.499 kb on + strand, within DvMF_2415at 3054.657 kb on - strand, within DvMF_2415at 3054.796 kb on + strand, within DvMF_2415at 3054.836 kb on + strand, within DvMF_2415at 3054.925 kb on - strand, within DvMF_2415at 3054.970 kb on - strand, within DvMF_2415at 3055.034 kb on - strand, within DvMF_2415at 3055.226 kb on + strand, within DvMF_2415at 3055.257 kb on + strand, within DvMF_2415at 3055.465 kb on - strandat 3055.505 kb on - strandat 3055.595 kb on + strand, within DvMF_2416at 3055.624 kb on - strand, within DvMF_2416at 3055.624 kb on - strand, within DvMF_2416at 3055.858 kb on + strandat 3055.886 kb on - strandat 3055.964 kb on + strand, within DvMF_2417at 3056.000 kb on + strand, within DvMF_2417at 3056.095 kb on - strand, within DvMF_2417at 3056.371 kb on + strand, within DvMF_2418at 3056.379 kb on - strand, within DvMF_2418at 3056.508 kb on + strand, within DvMF_2418at 3056.573 kb on + strand, within DvMF_2418at 3056.577 kb on + strand, within DvMF_2418at 3056.592 kb on - strandat 3056.686 kb on - strandat 3056.808 kb on + strand, within DvMF_2419at 3056.808 kb on + strand, within DvMF_2419at 3056.816 kb on - strand, within DvMF_2419at 3056.816 kb on - strand, within DvMF_2419at 3056.816 kb on - strand, within DvMF_2419at 3056.816 kb on - strand, within DvMF_2419

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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3,054,499 + DvMF_2415 0.52 -1.6
3,054,657 - DvMF_2415 0.60 -0.8
3,054,796 + DvMF_2415 0.66 -0.4
3,054,836 + DvMF_2415 0.68 -1.5
3,054,925 - DvMF_2415 0.73 -1.6
3,054,970 - DvMF_2415 0.75 -0.8
3,055,034 - DvMF_2415 0.78 -0.2
3,055,226 + DvMF_2415 0.87 -0.2
3,055,257 + DvMF_2415 0.89 -1.0
3,055,465 - -2.4
3,055,505 - -1.0
3,055,595 + DvMF_2416 0.27 -0.9
3,055,624 - DvMF_2416 0.35 -1.0
3,055,624 - DvMF_2416 0.35 -2.8
3,055,858 + -0.4
3,055,886 - -0.9
3,055,964 + DvMF_2417 0.28 -0.6
3,056,000 + DvMF_2417 0.38 -1.1
3,056,095 - DvMF_2417 0.63 -0.3
3,056,371 + DvMF_2418 0.36 -1.5
3,056,379 - DvMF_2418 0.38 +0.4
3,056,508 + DvMF_2418 0.70 -0.1
3,056,573 + DvMF_2418 0.86 -0.0
3,056,577 + DvMF_2418 0.87 +0.1
3,056,592 - -1.1
3,056,686 - -0.8
3,056,808 + DvMF_2419 0.16 -1.0
3,056,808 + DvMF_2419 0.16 +0.4
3,056,816 - DvMF_2419 0.17 -0.5
3,056,816 - DvMF_2419 0.17 +0.3
3,056,816 - DvMF_2419 0.17 -0.7
3,056,816 - DvMF_2419 0.17 -2.3

Or see this region's nucleotide sequence