Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2327

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2326 and DvMF_2327 are separated by 211 nucleotidesDvMF_2327 and DvMF_2328 are separated by 336 nucleotides DvMF_2326: DvMF_2326 - TPR repeat-containing protein (RefSeq), at 2,930,828 to 2,931,592 _2326 DvMF_2327: DvMF_2327 - pyridine nucleotide-disulfide oxidoreductase family protein (RefSeq), at 2,931,804 to 2,933,087 _2327 DvMF_2328: DvMF_2328 - glycosyl transferase group 1 (RefSeq), at 2,933,424 to 2,936,039 _2328 Position (kb) 2931 2932 2933 2934Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2931.200 kb on + strand, within DvMF_2326at 2931.503 kb on + strand, within DvMF_2326at 2931.582 kb on + strandat 2931.590 kb on - strandat 2931.612 kb on + strandat 2931.620 kb on - strandat 2931.690 kb on + strandat 2931.768 kb on + strandat 2931.773 kb on + strandat 2931.788 kb on + strandat 2932.090 kb on - strand, within DvMF_2327at 2932.094 kb on + strand, within DvMF_2327at 2932.134 kb on + strand, within DvMF_2327at 2932.139 kb on + strand, within DvMF_2327at 2932.183 kb on + strand, within DvMF_2327at 2932.191 kb on - strand, within DvMF_2327at 2932.256 kb on - strand, within DvMF_2327at 2932.345 kb on + strand, within DvMF_2327at 2932.390 kb on + strand, within DvMF_2327at 2932.543 kb on + strand, within DvMF_2327at 2932.571 kb on - strand, within DvMF_2327at 2932.709 kb on - strand, within DvMF_2327at 2933.203 kb on + strandat 2933.211 kb on - strandat 2933.213 kb on + strandat 2933.216 kb on - strandat 2933.465 kb on - strandat 2933.766 kb on - strand, within DvMF_2328at 2933.989 kb on + strand, within DvMF_2328at 2933.989 kb on + strand, within DvMF_2328at 2933.997 kb on - strand, within DvMF_2328at 2934.014 kb on + strand, within DvMF_2328

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
remove
2,931,200 + DvMF_2326 0.49 -0.3
2,931,503 + DvMF_2326 0.88 -0.7
2,931,582 + -0.6
2,931,590 - -0.1
2,931,612 + -0.7
2,931,620 - -1.4
2,931,690 + +0.4
2,931,768 + -4.9
2,931,773 + -1.0
2,931,788 + -0.9
2,932,090 - DvMF_2327 0.22 -0.6
2,932,094 + DvMF_2327 0.23 -2.8
2,932,134 + DvMF_2327 0.26 -0.6
2,932,139 + DvMF_2327 0.26 -2.5
2,932,183 + DvMF_2327 0.30 -1.0
2,932,191 - DvMF_2327 0.30 -0.8
2,932,256 - DvMF_2327 0.35 -2.6
2,932,345 + DvMF_2327 0.42 -1.4
2,932,390 + DvMF_2327 0.46 -0.6
2,932,543 + DvMF_2327 0.58 -1.5
2,932,571 - DvMF_2327 0.60 -1.9
2,932,709 - DvMF_2327 0.70 -0.6
2,933,203 + +0.0
2,933,211 - -1.8
2,933,213 + -0.5
2,933,216 - +0.9
2,933,465 - -1.4
2,933,766 - DvMF_2328 0.13 -4.2
2,933,989 + DvMF_2328 0.22 -0.1
2,933,989 + DvMF_2328 0.22 -1.1
2,933,997 - DvMF_2328 0.22 -0.3
2,934,014 + DvMF_2328 0.23 -0.9

Or see this region's nucleotide sequence