Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2304

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2303 and DvMF_2304 are separated by 161 nucleotidesDvMF_2304 and hisH overlap by 8 nucleotides DvMF_2303: DvMF_2303 - esterase/lipase-like protein (RefSeq), at 2,893,323 to 2,894,333 _2303 DvMF_2304: DvMF_2304 - imidazole glycerol phosphate synthase subunit HisF (RefSeq), at 2,894,495 to 2,895,274 _2304 DvMF_2305: hisH - IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data), at 2,895,267 to 2,895,905 hisH Position (kb) 2894 2895 2896Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2893.668 kb on + strand, within DvMF_2303at 2893.942 kb on + strand, within DvMF_2303at 2894.119 kb on + strand, within DvMF_2303at 2894.512 kb on + strandat 2894.553 kb on + strandat 2894.615 kb on - strand, within DvMF_2304at 2894.896 kb on + strand, within DvMF_2304at 2895.003 kb on + strand, within DvMF_2304at 2895.005 kb on - strand, within DvMF_2304at 2895.216 kb on + strandat 2895.282 kb on - strandat 2895.411 kb on + strand, within hisHat 2895.738 kb on - strand, within hisHat 2895.840 kb on - strand, within hisHat 2895.896 kb on - strandat 2895.958 kb on + strandat 2896.166 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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2,893,668 + DvMF_2303 0.34 -0.2
2,893,942 + DvMF_2303 0.61 -1.4
2,894,119 + DvMF_2303 0.79 -0.9
2,894,512 + -1.1
2,894,553 + -2.3
2,894,615 - DvMF_2304 0.15 -2.3
2,894,896 + DvMF_2304 0.51 -3.5
2,895,003 + DvMF_2304 0.65 -2.3
2,895,005 - DvMF_2304 0.65 -4.1
2,895,216 + -2.1
2,895,282 - -0.4
2,895,411 + hisH DvMF_2305 0.23 -2.8
2,895,738 - hisH DvMF_2305 0.74 -3.0
2,895,840 - hisH DvMF_2305 0.90 -1.8
2,895,896 - -2.6
2,895,958 + -1.7
2,896,166 + +1.5

Or see this region's nucleotide sequence