Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2242 and DvMF_2243 are separated by 519 nucleotides DvMF_2243 and DvMF_2244 are separated by 425 nucleotides DvMF_2244 and DvMF_2245 are separated by 91 nucleotides
DvMF_2242: DvMF_2242 - putative signal transduction protein (RefSeq), at 2,815,394 to 2,816,470
_2242
DvMF_2243: DvMF_2243 - AMP-dependent synthetase and ligase (RefSeq), at 2,816,990 to 2,818,678
_2243
DvMF_2244: DvMF_2244 - Stress responsive alpha-beta barrel domain protein (RefSeq), at 2,819,104 to 2,819,409
_2244
DvMF_2245: DvMF_2245 - Methyltransferase type 11 (RefSeq), at 2,819,501 to 2,820,139
_2245
Position (kb)
2816
2817
2818
2819 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2816.330 kb on - strand, within DvMF_2242 at 2816.342 kb on + strand, within DvMF_2242 at 2816.417 kb on + strand at 2816.527 kb on + strand at 2817.084 kb on + strand at 2817.091 kb on - strand at 2817.211 kb on + strand, within DvMF_2243 at 2817.516 kb on - strand, within DvMF_2243 at 2817.520 kb on + strand, within DvMF_2243 at 2818.068 kb on + strand, within DvMF_2243 at 2818.118 kb on + strand, within DvMF_2243 at 2818.808 kb on + strand at 2818.816 kb on - strand at 2818.824 kb on + strand at 2818.994 kb on + strand at 2819.022 kb on + strand at 2819.228 kb on + strand, within DvMF_2244 at 2819.228 kb on + strand, within DvMF_2244 at 2819.243 kb on + strand, within DvMF_2244 at 2819.319 kb on + strand, within DvMF_2244 at 2819.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml remove 2,816,330 - DvMF_2242 0.87 +0.2 2,816,342 + DvMF_2242 0.88 -1.0 2,816,417 + -0.2 2,816,527 + -2.7 2,817,084 + -1.5 2,817,091 - +1.0 2,817,211 + DvMF_2243 0.13 -3.1 2,817,516 - DvMF_2243 0.31 -0.7 2,817,520 + DvMF_2243 0.31 -3.0 2,818,068 + DvMF_2243 0.64 -0.3 2,818,118 + DvMF_2243 0.67 -2.8 2,818,808 + -4.4 2,818,816 - -0.7 2,818,824 + -0.4 2,818,994 + -3.0 2,819,022 + -0.7 2,819,228 + DvMF_2244 0.41 -0.8 2,819,228 + DvMF_2244 0.41 -3.3 2,819,243 + DvMF_2244 0.45 -4.0 2,819,319 + DvMF_2244 0.70 -0.8 2,819,412 - +0.9
Or see this region's nucleotide sequence