Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2091

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2090 and DvMF_2091 are separated by 498 nucleotidesDvMF_2091 and DvMF_2092 are separated by 376 nucleotides DvMF_2090: DvMF_2090 - hypothetical protein (RefSeq), at 2,602,032 to 2,603,102 _2090 DvMF_2091: DvMF_2091 - hypothetical protein (RefSeq), at 2,603,601 to 2,606,354 _2091 DvMF_2092: DvMF_2092 - hypothetical protein (RefSeq), at 2,606,731 to 2,608,170 _2092 Position (kb) 2603 2604 2605 2606 2607Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2602.626 kb on + strand, within DvMF_2090at 2602.812 kb on + strand, within DvMF_2090at 2602.859 kb on - strand, within DvMF_2090at 2602.866 kb on + strand, within DvMF_2090at 2603.054 kb on + strandat 2603.076 kb on + strandat 2603.466 kb on - strandat 2603.591 kb on + strandat 2603.873 kb on - strandat 2603.890 kb on + strand, within DvMF_2091at 2604.238 kb on + strand, within DvMF_2091at 2604.238 kb on + strand, within DvMF_2091at 2604.246 kb on - strand, within DvMF_2091at 2604.255 kb on + strand, within DvMF_2091at 2604.283 kb on + strand, within DvMF_2091at 2604.402 kb on - strand, within DvMF_2091at 2604.549 kb on + strand, within DvMF_2091at 2604.549 kb on + strand, within DvMF_2091at 2604.576 kb on - strand, within DvMF_2091at 2604.610 kb on - strand, within DvMF_2091at 2604.780 kb on - strand, within DvMF_2091at 2604.780 kb on - strand, within DvMF_2091at 2604.816 kb on - strand, within DvMF_2091at 2604.821 kb on - strand, within DvMF_2091at 2604.830 kb on + strand, within DvMF_2091at 2604.950 kb on - strand, within DvMF_2091at 2605.006 kb on + strand, within DvMF_2091at 2605.089 kb on + strand, within DvMF_2091at 2605.112 kb on - strand, within DvMF_2091at 2605.185 kb on + strand, within DvMF_2091at 2605.546 kb on + strand, within DvMF_2091at 2605.707 kb on - strand, within DvMF_2091at 2605.750 kb on - strand, within DvMF_2091at 2605.775 kb on - strand, within DvMF_2091at 2606.370 kb on + strandat 2606.631 kb on + strandat 2606.852 kb on + strandat 2606.860 kb on - strandat 2606.953 kb on + strand, within DvMF_2092at 2606.955 kb on + strand, within DvMF_2092at 2606.961 kb on - strand, within DvMF_2092at 2607.079 kb on + strand, within DvMF_2092at 2607.099 kb on + strand, within DvMF_2092at 2607.129 kb on - strand, within DvMF_2092at 2607.157 kb on + strand, within DvMF_2092at 2607.290 kb on + strand, within DvMF_2092

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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2,602,626 + DvMF_2090 0.55 -0.3
2,602,812 + DvMF_2090 0.73 -1.6
2,602,859 - DvMF_2090 0.77 -0.1
2,602,866 + DvMF_2090 0.78 -0.2
2,603,054 + -0.7
2,603,076 + -0.0
2,603,466 - -0.9
2,603,591 + -0.4
2,603,873 - -0.7
2,603,890 + DvMF_2091 0.10 -0.1
2,604,238 + DvMF_2091 0.23 -0.1
2,604,238 + DvMF_2091 0.23 -2.7
2,604,246 - DvMF_2091 0.23 -0.6
2,604,255 + DvMF_2091 0.24 -0.4
2,604,283 + DvMF_2091 0.25 -0.7
2,604,402 - DvMF_2091 0.29 -0.9
2,604,549 + DvMF_2091 0.34 +0.2
2,604,549 + DvMF_2091 0.34 -0.8
2,604,576 - DvMF_2091 0.35 -0.5
2,604,610 - DvMF_2091 0.37 -0.5
2,604,780 - DvMF_2091 0.43 -0.2
2,604,780 - DvMF_2091 0.43 -0.3
2,604,816 - DvMF_2091 0.44 -0.8
2,604,821 - DvMF_2091 0.44 -0.2
2,604,830 + DvMF_2091 0.45 -2.1
2,604,950 - DvMF_2091 0.49 -0.4
2,605,006 + DvMF_2091 0.51 -1.0
2,605,089 + DvMF_2091 0.54 -0.4
2,605,112 - DvMF_2091 0.55 +0.5
2,605,185 + DvMF_2091 0.58 -0.1
2,605,546 + DvMF_2091 0.71 -1.0
2,605,707 - DvMF_2091 0.76 -2.1
2,605,750 - DvMF_2091 0.78 +0.7
2,605,775 - DvMF_2091 0.79 -0.6
2,606,370 + -3.8
2,606,631 + -0.7
2,606,852 + -1.6
2,606,860 - -0.7
2,606,953 + DvMF_2092 0.15 -1.9
2,606,955 + DvMF_2092 0.16 -0.9
2,606,961 - DvMF_2092 0.16 -0.5
2,607,079 + DvMF_2092 0.24 -0.1
2,607,099 + DvMF_2092 0.26 -0.6
2,607,129 - DvMF_2092 0.28 -0.3
2,607,157 + DvMF_2092 0.30 -0.7
2,607,290 + DvMF_2092 0.39 -0.0

Or see this region's nucleotide sequence