Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1997

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1996 and DvMF_1997 are separated by 350 nucleotidesDvMF_1997 and DvMF_1998 are separated by 118 nucleotidesDvMF_1998 and DvMF_1999 overlap by 8 nucleotides DvMF_1996: DvMF_1996 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,473,689 to 2,475,722 _1996 DvMF_1997: DvMF_1997 - hypothetical protein (RefSeq), at 2,476,073 to 2,477,323 _1997 DvMF_1998: DvMF_1998 - hypothetical protein (RefSeq), at 2,477,442 to 2,477,903 _1998 DvMF_1999: DvMF_1999 - protein of unknown function DUF112 transmembrane (RefSeq), at 2,477,896 to 2,479,440 _1999 Position (kb) 2476 2477 2478Strain fitness (log2 ratio) -3 -2 -1 0 1at 2475.195 kb on + strand, within DvMF_1996at 2475.728 kb on - strandat 2475.751 kb on + strandat 2475.761 kb on - strandat 2475.906 kb on + strandat 2475.909 kb on - strandat 2475.914 kb on - strandat 2476.143 kb on + strandat 2476.351 kb on + strand, within DvMF_1997at 2476.423 kb on + strand, within DvMF_1997at 2476.428 kb on + strand, within DvMF_1997at 2476.433 kb on + strand, within DvMF_1997at 2476.621 kb on - strand, within DvMF_1997at 2476.683 kb on + strand, within DvMF_1997at 2476.691 kb on - strand, within DvMF_1997at 2476.849 kb on - strand, within DvMF_1997at 2476.881 kb on - strand, within DvMF_1997at 2477.276 kb on - strandat 2477.295 kb on - strandat 2477.420 kb on + strandat 2477.579 kb on - strand, within DvMF_1998at 2477.603 kb on + strand, within DvMF_1998at 2477.682 kb on + strand, within DvMF_1998at 2477.749 kb on - strand, within DvMF_1998at 2477.749 kb on - strand, within DvMF_1998at 2477.764 kb on - strand, within DvMF_1998at 2477.815 kb on - strand, within DvMF_1998at 2477.923 kb on - strandat 2478.274 kb on + strand, within DvMF_1999

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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2,475,195 + DvMF_1996 0.74 -2.0
2,475,728 - -2.8
2,475,751 + -0.9
2,475,761 - -0.2
2,475,906 + -0.1
2,475,909 - +0.7
2,475,914 - -0.9
2,476,143 + -0.4
2,476,351 + DvMF_1997 0.22 -0.5
2,476,423 + DvMF_1997 0.28 -1.0
2,476,428 + DvMF_1997 0.28 -0.1
2,476,433 + DvMF_1997 0.29 -0.5
2,476,621 - DvMF_1997 0.44 -0.5
2,476,683 + DvMF_1997 0.49 -1.4
2,476,691 - DvMF_1997 0.49 -0.2
2,476,849 - DvMF_1997 0.62 -0.6
2,476,881 - DvMF_1997 0.65 -0.9
2,477,276 - -2.2
2,477,295 - -0.7
2,477,420 + -0.0
2,477,579 - DvMF_1998 0.30 -1.5
2,477,603 + DvMF_1998 0.35 -0.2
2,477,682 + DvMF_1998 0.52 -0.9
2,477,749 - DvMF_1998 0.66 -0.6
2,477,749 - DvMF_1998 0.66 -1.6
2,477,764 - DvMF_1998 0.70 -2.8
2,477,815 - DvMF_1998 0.81 -0.9
2,477,923 - +0.5
2,478,274 + DvMF_1999 0.24 -0.7

Or see this region's nucleotide sequence