Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1881

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1880 and DvMF_1881 are separated by 195 nucleotidesDvMF_1881 and DvMF_1882 are separated by 267 nucleotidesDvMF_1882 and DvMF_1883 overlap by 8 nucleotides DvMF_1880: DvMF_1880 - outer membrane autotransporter barrel domain protein (RefSeq), at 2,312,841 to 2,315,651 _1880 DvMF_1881: DvMF_1881 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,315,847 to 2,317,625 _1881 DvMF_1882: DvMF_1882 - acetolactate synthase 1 regulatory subunit (RefSeq), at 2,317,893 to 2,318,258 _1882 DvMF_1883: DvMF_1883 - acetolactate synthase catalytic subunit (RefSeq), at 2,318,251 to 2,320,098 _1883 Position (kb) 2315 2316 2317 2318Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2314.952 kb on + strand, within DvMF_1880at 2315.031 kb on + strand, within DvMF_1880at 2315.081 kb on + strand, within DvMF_1880at 2315.102 kb on + strand, within DvMF_1880at 2315.147 kb on + strand, within DvMF_1880at 2315.199 kb on + strand, within DvMF_1880at 2315.336 kb on - strand, within DvMF_1880at 2315.591 kb on + strandat 2315.591 kb on + strandat 2315.591 kb on + strandat 2315.739 kb on + strandat 2316.249 kb on + strand, within DvMF_1881at 2316.257 kb on - strand, within DvMF_1881at 2316.529 kb on - strand, within DvMF_1881at 2316.565 kb on + strand, within DvMF_1881at 2316.879 kb on - strand, within DvMF_1881at 2317.326 kb on + strand, within DvMF_1881at 2317.336 kb on - strand, within DvMF_1881at 2317.584 kb on - strandat 2317.944 kb on + strand, within DvMF_1882at 2318.170 kb on + strand, within DvMF_1882at 2318.436 kb on - strand, within DvMF_1883at 2318.519 kb on - strand, within DvMF_1883at 2318.558 kb on + strand, within DvMF_1883at 2318.561 kb on - strand, within DvMF_1883at 2318.566 kb on - strand, within DvMF_1883at 2318.579 kb on + strand, within DvMF_1883

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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2,314,952 + DvMF_1880 0.75 +0.8
2,315,031 + DvMF_1880 0.78 -0.8
2,315,081 + DvMF_1880 0.80 -0.8
2,315,102 + DvMF_1880 0.80 -0.6
2,315,147 + DvMF_1880 0.82 -0.5
2,315,199 + DvMF_1880 0.84 -0.6
2,315,336 - DvMF_1880 0.89 -0.8
2,315,591 + -0.2
2,315,591 + -0.2
2,315,591 + -1.0
2,315,739 + -1.2
2,316,249 + DvMF_1881 0.23 -1.2
2,316,257 - DvMF_1881 0.23 -1.1
2,316,529 - DvMF_1881 0.38 -0.1
2,316,565 + DvMF_1881 0.40 -0.7
2,316,879 - DvMF_1881 0.58 -0.8
2,317,326 + DvMF_1881 0.83 +0.4
2,317,336 - DvMF_1881 0.84 -0.4
2,317,584 - -3.3
2,317,944 + DvMF_1882 0.14 -1.8
2,318,170 + DvMF_1882 0.76 -3.5
2,318,436 - DvMF_1883 0.10 -0.2
2,318,519 - DvMF_1883 0.15 -5.1
2,318,558 + DvMF_1883 0.17 -1.5
2,318,561 - DvMF_1883 0.17 -1.5
2,318,566 - DvMF_1883 0.17 -0.9
2,318,579 + DvMF_1883 0.18 -0.7

Or see this region's nucleotide sequence