Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1880 and DvMF_1881 are separated by 195 nucleotides DvMF_1881 and DvMF_1882 are separated by 267 nucleotides DvMF_1882 and DvMF_1883 overlap by 8 nucleotides
DvMF_1880: DvMF_1880 - outer membrane autotransporter barrel domain protein (RefSeq), at 2,312,841 to 2,315,651
_1880
DvMF_1881: DvMF_1881 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,315,847 to 2,317,625
_1881
DvMF_1882: DvMF_1882 - acetolactate synthase 1 regulatory subunit (RefSeq), at 2,317,893 to 2,318,258
_1882
DvMF_1883: DvMF_1883 - acetolactate synthase catalytic subunit (RefSeq), at 2,318,251 to 2,320,098
_1883
Position (kb)
2315
2316
2317
2318 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2314.952 kb on + strand, within DvMF_1880 at 2315.031 kb on + strand, within DvMF_1880 at 2315.081 kb on + strand, within DvMF_1880 at 2315.102 kb on + strand, within DvMF_1880 at 2315.147 kb on + strand, within DvMF_1880 at 2315.199 kb on + strand, within DvMF_1880 at 2315.336 kb on - strand, within DvMF_1880 at 2315.591 kb on + strand at 2315.591 kb on + strand at 2315.591 kb on + strand at 2315.739 kb on + strand at 2316.249 kb on + strand, within DvMF_1881 at 2316.257 kb on - strand, within DvMF_1881 at 2316.529 kb on - strand, within DvMF_1881 at 2316.565 kb on + strand, within DvMF_1881 at 2316.879 kb on - strand, within DvMF_1881 at 2317.326 kb on + strand, within DvMF_1881 at 2317.336 kb on - strand, within DvMF_1881 at 2317.584 kb on - strand at 2317.944 kb on + strand, within DvMF_1882 at 2318.170 kb on + strand, within DvMF_1882 at 2318.436 kb on - strand, within DvMF_1883 at 2318.519 kb on - strand, within DvMF_1883 at 2318.558 kb on + strand, within DvMF_1883 at 2318.561 kb on - strand, within DvMF_1883 at 2318.566 kb on - strand, within DvMF_1883 at 2318.579 kb on + strand, within DvMF_1883
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml remove 2,314,952 + DvMF_1880 0.75 +0.8 2,315,031 + DvMF_1880 0.78 -0.8 2,315,081 + DvMF_1880 0.80 -0.8 2,315,102 + DvMF_1880 0.80 -0.6 2,315,147 + DvMF_1880 0.82 -0.5 2,315,199 + DvMF_1880 0.84 -0.6 2,315,336 - DvMF_1880 0.89 -0.8 2,315,591 + -0.2 2,315,591 + -0.2 2,315,591 + -1.0 2,315,739 + -1.2 2,316,249 + DvMF_1881 0.23 -1.2 2,316,257 - DvMF_1881 0.23 -1.1 2,316,529 - DvMF_1881 0.38 -0.1 2,316,565 + DvMF_1881 0.40 -0.7 2,316,879 - DvMF_1881 0.58 -0.8 2,317,326 + DvMF_1881 0.83 +0.4 2,317,336 - DvMF_1881 0.84 -0.4 2,317,584 - -3.3 2,317,944 + DvMF_1882 0.14 -1.8 2,318,170 + DvMF_1882 0.76 -3.5 2,318,436 - DvMF_1883 0.10 -0.2 2,318,519 - DvMF_1883 0.15 -5.1 2,318,558 + DvMF_1883 0.17 -1.5 2,318,561 - DvMF_1883 0.17 -1.5 2,318,566 - DvMF_1883 0.17 -0.9 2,318,579 + DvMF_1883 0.18 -0.7
Or see this region's nucleotide sequence