Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1812

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1811 and DvMF_1812 are separated by 268 nucleotidesDvMF_1812 and DvMF_1813 are separated by 388 nucleotides DvMF_1811: DvMF_1811 - pantothenate kinase (RefSeq), at 2,213,449 to 2,214,237 _1811 DvMF_1812: DvMF_1812 - hypothetical protein (RefSeq), at 2,214,506 to 2,214,787 _1812 DvMF_1813: DvMF_1813 - hypothetical protein (RefSeq), at 2,215,176 to 2,215,808 _1813 Position (kb) 2214 2215Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2214.271 kb on + strandat 2214.278 kb on + strandat 2214.279 kb on - strandat 2214.294 kb on - strandat 2214.311 kb on - strandat 2214.420 kb on + strandat 2214.793 kb on + strandat 2214.920 kb on - strandat 2214.930 kb on - strandat 2215.092 kb on - strandat 2215.214 kb on - strandat 2215.236 kb on - strandat 2215.283 kb on - strand, within DvMF_1813at 2215.315 kb on + strand, within DvMF_1813at 2215.371 kb on + strand, within DvMF_1813at 2215.628 kb on - strand, within DvMF_1813at 2215.630 kb on + strand, within DvMF_1813

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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2,214,271 + +0.8
2,214,278 + -1.0
2,214,279 - -1.0
2,214,294 - -0.1
2,214,311 - -4.2
2,214,420 + +0.2
2,214,793 + -0.4
2,214,920 - -0.7
2,214,930 - -0.3
2,215,092 - -0.5
2,215,214 - -0.4
2,215,236 - -0.4
2,215,283 - DvMF_1813 0.17 -2.0
2,215,315 + DvMF_1813 0.22 -0.3
2,215,371 + DvMF_1813 0.31 -1.0
2,215,628 - DvMF_1813 0.71 -0.8
2,215,630 + DvMF_1813 0.72 -0.6

Or see this region's nucleotide sequence