Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1717

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1715 and DvMF_1716 are separated by 17 nucleotidesDvMF_1716 and argC are separated by 76 nucleotidesargC and DvMF_1718 are separated by 270 nucleotides DvMF_1715: DvMF_1715 - aminotransferase class V (RefSeq), at 2,096,207 to 2,097,376 _1715 DvMF_1716: DvMF_1716 - Domain of unknown function DUF1844 (RefSeq), at 2,097,394 to 2,097,717 _1716 DvMF_1717: argC - N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq), at 2,097,794 to 2,098,846 argC DvMF_1718: DvMF_1718 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,099,117 to 2,101,108 _1718 Position (kb) 2097 2098 2099Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2097.931 kb on + strand, within argCat 2098.132 kb on + strand, within argCat 2098.143 kb on + strand, within argCat 2098.440 kb on + strand, within argCat 2098.460 kb on + strand, within argCat 2098.487 kb on - strand, within argCat 2098.507 kb on + strand, within argCat 2098.679 kb on - strand, within argCat 2098.893 kb on - strandat 2099.016 kb on - strandat 2099.159 kb on + strandat 2099.367 kb on + strand, within DvMF_1718at 2099.439 kb on + strand, within DvMF_1718at 2099.604 kb on + strand, within DvMF_1718

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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2,097,931 + argC DvMF_1717 0.13 -2.4
2,098,132 + argC DvMF_1717 0.32 -1.6
2,098,143 + argC DvMF_1717 0.33 -3.5
2,098,440 + argC DvMF_1717 0.61 -1.8
2,098,460 + argC DvMF_1717 0.63 -2.9
2,098,487 - argC DvMF_1717 0.66 -4.9
2,098,507 + argC DvMF_1717 0.68 -2.8
2,098,679 - argC DvMF_1717 0.84 -1.9
2,098,893 - -0.4
2,099,016 - -1.5
2,099,159 + +0.6
2,099,367 + DvMF_1718 0.13 -0.5
2,099,439 + DvMF_1718 0.16 -0.1
2,099,604 + DvMF_1718 0.24 -0.8

Or see this region's nucleotide sequence