Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1644

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1643 and DvMF_1644 are separated by 105 nucleotidesDvMF_1644 and DvMF_1645 are separated by 251 nucleotides DvMF_1643: DvMF_1643 - phage tape measure protein (RefSeq), at 2,022,877 to 2,025,693 _1643 DvMF_1644: DvMF_1644 - hypothetical protein (RefSeq), at 2,025,799 to 2,026,587 _1644 DvMF_1645: DvMF_1645 - prophage antirepressor (RefSeq), at 2,026,839 to 2,027,723 _1645 Position (kb) 2025 2026 2027Strain fitness (log2 ratio) -2 -1 0 1at 2024.874 kb on - strand, within DvMF_1643at 2025.025 kb on + strand, within DvMF_1643at 2025.075 kb on - strand, within DvMF_1643at 2025.285 kb on + strand, within DvMF_1643at 2025.384 kb on + strand, within DvMF_1643at 2025.581 kb on + strandat 2025.595 kb on - strandat 2025.622 kb on + strandat 2025.622 kb on + strandat 2025.813 kb on - strandat 2026.138 kb on - strand, within DvMF_1644at 2026.404 kb on + strand, within DvMF_1644at 2026.498 kb on + strand, within DvMF_1644at 2026.757 kb on + strandat 2027.000 kb on + strand, within DvMF_1645at 2027.064 kb on - strand, within DvMF_1645at 2027.129 kb on + strand, within DvMF_1645at 2027.167 kb on - strand, within DvMF_1645at 2027.253 kb on - strand, within DvMF_1645at 2027.355 kb on + strand, within DvMF_1645at 2027.417 kb on - strand, within DvMF_1645

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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2,024,874 - DvMF_1643 0.71 +0.0
2,025,025 + DvMF_1643 0.76 +0.0
2,025,075 - DvMF_1643 0.78 -0.6
2,025,285 + DvMF_1643 0.85 -0.3
2,025,384 + DvMF_1643 0.89 -0.6
2,025,581 + -1.2
2,025,595 - +0.1
2,025,622 + -0.0
2,025,622 + -1.1
2,025,813 - -0.8
2,026,138 - DvMF_1644 0.43 +1.6
2,026,404 + DvMF_1644 0.77 -1.0
2,026,498 + DvMF_1644 0.89 -1.7
2,026,757 + +1.1
2,027,000 + DvMF_1645 0.18 -0.2
2,027,064 - DvMF_1645 0.25 -0.6
2,027,129 + DvMF_1645 0.33 -1.0
2,027,167 - DvMF_1645 0.37 -0.1
2,027,253 - DvMF_1645 0.47 -1.1
2,027,355 + DvMF_1645 0.58 -0.5
2,027,417 - DvMF_1645 0.65 -2.5

Or see this region's nucleotide sequence