Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1637

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1634 and DvMF_1635 overlap by 17 nucleotidesDvMF_1635 and DvMF_1636 are separated by 51 nucleotidesDvMF_1636 and DvMF_1637 are separated by 3 nucleotidesDvMF_1637 and DvMF_1638 are separated by 2 nucleotidesDvMF_1638 and DvMF_1639 overlap by 1 nucleotides DvMF_1634: DvMF_1634 - phage protein (RefSeq), at 2,016,313 to 2,016,570 _1634 DvMF_1635: DvMF_1635 - transcriptional regulator, XRE family (RefSeq), at 2,016,554 to 2,016,892 _1635 DvMF_1636: DvMF_1636 - hypothetical protein (RefSeq), at 2,016,944 to 2,017,444 _1636 DvMF_1637: DvMF_1637 - hypothetical protein (RefSeq), at 2,017,448 to 2,017,771 _1637 DvMF_1638: DvMF_1638 - hypothetical protein (RefSeq), at 2,017,774 to 2,018,379 _1638 DvMF_1639: DvMF_1639 - Phage-related protein tail component-like protein (RefSeq), at 2,018,379 to 2,021,135 _1639 Position (kb) 2017 2018Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2016.900 kb on - strandat 2017.129 kb on + strand, within DvMF_1636at 2017.193 kb on - strand, within DvMF_1636at 2017.358 kb on - strand, within DvMF_1636at 2017.449 kb on - strandat 2017.471 kb on - strandat 2017.670 kb on - strand, within DvMF_1637at 2017.732 kb on + strand, within DvMF_1637at 2017.807 kb on - strandat 2017.818 kb on + strandat 2018.003 kb on - strand, within DvMF_1638at 2018.053 kb on + strand, within DvMF_1638at 2018.092 kb on - strand, within DvMF_1638at 2018.422 kb on - strandat 2018.429 kb on - strandat 2018.435 kb on + strandat 2018.468 kb on + strandat 2018.562 kb on - strandat 2018.570 kb on - strandat 2018.675 kb on - strand, within DvMF_1639at 2018.675 kb on - strand, within DvMF_1639at 2018.686 kb on - strand, within DvMF_1639

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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2,016,900 - -0.3
2,017,129 + DvMF_1636 0.37 -4.0
2,017,193 - DvMF_1636 0.50 -1.2
2,017,358 - DvMF_1636 0.83 -0.5
2,017,449 - -1.1
2,017,471 - +0.0
2,017,670 - DvMF_1637 0.69 -1.5
2,017,732 + DvMF_1637 0.88 -1.2
2,017,807 - -0.3
2,017,818 + +1.5
2,018,003 - DvMF_1638 0.38 -0.8
2,018,053 + DvMF_1638 0.46 -1.1
2,018,092 - DvMF_1638 0.52 -0.8
2,018,422 - -0.1
2,018,429 - -0.1
2,018,435 + -0.8
2,018,468 + +0.7
2,018,562 - -0.4
2,018,570 - -0.5
2,018,675 - DvMF_1639 0.11 -1.3
2,018,675 - DvMF_1639 0.11 -0.3
2,018,686 - DvMF_1639 0.11 -1.1

Or see this region's nucleotide sequence