Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1464

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1463 and DvMF_1464 are separated by 165 nucleotidesDvMF_1464 and DvMF_1465 are separated by 586 nucleotides DvMF_1463: DvMF_1463 - response regulator receiver protein (RefSeq), at 1,793,379 to 1,794,743 _1463 DvMF_1464: DvMF_1464 - Homocysteine formation from aspartate semialdehyde (DUF39 component) (from data), at 1,794,909 to 1,796,081 _1464 DvMF_1465: DvMF_1465 - hypothetical protein (RefSeq), at 1,796,668 to 1,797,522 _1465 Position (kb) 1794 1795 1796 1797Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1794.260 kb on - strand, within DvMF_1463at 1795.105 kb on - strand, within DvMF_1464at 1795.246 kb on - strand, within DvMF_1464at 1795.251 kb on - strand, within DvMF_1464at 1795.388 kb on - strand, within DvMF_1464at 1795.393 kb on - strand, within DvMF_1464at 1795.553 kb on + strand, within DvMF_1464at 1795.553 kb on + strand, within DvMF_1464at 1795.602 kb on + strand, within DvMF_1464at 1795.609 kb on + strand, within DvMF_1464at 1795.610 kb on - strand, within DvMF_1464at 1795.692 kb on - strand, within DvMF_1464at 1795.699 kb on - strand, within DvMF_1464at 1795.993 kb on + strandat 1796.001 kb on - strandat 1796.083 kb on + strandat 1796.260 kb on + strandat 1796.485 kb on + strandat 1796.515 kb on + strandat 1796.520 kb on - strandat 1796.608 kb on - strandat 1796.740 kb on - strandat 1796.899 kb on - strand, within DvMF_1465

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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1,794,260 - DvMF_1463 0.65 +0.2
1,795,105 - DvMF_1464 0.17 -1.1
1,795,246 - DvMF_1464 0.29 -1.6
1,795,251 - DvMF_1464 0.29 -3.7
1,795,388 - DvMF_1464 0.41 -3.2
1,795,393 - DvMF_1464 0.41 -5.2
1,795,553 + DvMF_1464 0.55 -2.7
1,795,553 + DvMF_1464 0.55 -1.7
1,795,602 + DvMF_1464 0.59 -2.6
1,795,609 + DvMF_1464 0.60 -0.9
1,795,610 - DvMF_1464 0.60 -3.0
1,795,692 - DvMF_1464 0.67 -2.0
1,795,699 - DvMF_1464 0.67 -2.3
1,795,993 + -1.6
1,796,001 - -3.3
1,796,083 + -0.8
1,796,260 + -1.0
1,796,485 + -0.2
1,796,515 + -1.5
1,796,520 - -0.7
1,796,608 - -3.2
1,796,740 - -0.7
1,796,899 - DvMF_1465 0.27 -0.7

Or see this region's nucleotide sequence