Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1368

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1367 and DvMF_1368 are separated by 409 nucleotidesDvMF_1368 and DvMF_1369 are separated by 472 nucleotidesDvMF_1369 and DvMF_1370 are separated by 10 nucleotides DvMF_1367: DvMF_1367 - hypothetical protein (RefSeq), at 1,675,713 to 1,676,474 _1367 DvMF_1368: DvMF_1368 - glycoside hydrolase family 13 domain protein (RefSeq), at 1,676,884 to 1,677,198 _1368 DvMF_1369: DvMF_1369 - hypothetical protein (RefSeq), at 1,677,671 to 1,678,063 _1369 DvMF_1370: DvMF_1370 - DNA binding domain protein, excisionase family (RefSeq), at 1,678,074 to 1,678,358 _1370 Position (kb) 1676 1677 1678Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1675.947 kb on - strand, within DvMF_1367at 1676.002 kb on - strand, within DvMF_1367at 1676.075 kb on + strand, within DvMF_1367at 1676.129 kb on + strand, within DvMF_1367at 1676.177 kb on + strand, within DvMF_1367at 1676.299 kb on - strand, within DvMF_1367at 1676.304 kb on - strand, within DvMF_1367at 1676.332 kb on + strand, within DvMF_1367at 1676.582 kb on - strandat 1676.685 kb on + strandat 1676.873 kb on - strandat 1676.959 kb on - strand, within DvMF_1368at 1677.115 kb on + strand, within DvMF_1368at 1677.562 kb on - strandat 1677.715 kb on + strand, within DvMF_1369at 1677.738 kb on - strand, within DvMF_1369at 1678.097 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
remove
1,675,947 - DvMF_1367 0.31 -0.5
1,676,002 - DvMF_1367 0.38 -0.3
1,676,075 + DvMF_1367 0.48 -0.1
1,676,129 + DvMF_1367 0.55 -3.3
1,676,177 + DvMF_1367 0.61 -0.1
1,676,299 - DvMF_1367 0.77 -0.4
1,676,304 - DvMF_1367 0.78 -1.4
1,676,332 + DvMF_1367 0.81 -0.3
1,676,582 - -0.6
1,676,685 + -0.6
1,676,873 - +0.1
1,676,959 - DvMF_1368 0.24 -1.5
1,677,115 + DvMF_1368 0.73 -4.4
1,677,562 - -1.5
1,677,715 + DvMF_1369 0.11 -1.0
1,677,738 - DvMF_1369 0.17 +0.1
1,678,097 + -0.6

Or see this region's nucleotide sequence