Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1367 and DvMF_1368 are separated by 409 nucleotides DvMF_1368 and DvMF_1369 are separated by 472 nucleotides DvMF_1369 and DvMF_1370 are separated by 10 nucleotides
DvMF_1367: DvMF_1367 - hypothetical protein (RefSeq), at 1,675,713 to 1,676,474
_1367
DvMF_1368: DvMF_1368 - glycoside hydrolase family 13 domain protein (RefSeq), at 1,676,884 to 1,677,198
_1368
DvMF_1369: DvMF_1369 - hypothetical protein (RefSeq), at 1,677,671 to 1,678,063
_1369
DvMF_1370: DvMF_1370 - DNA binding domain protein, excisionase family (RefSeq), at 1,678,074 to 1,678,358
_1370
Position (kb)
1676
1677
1678 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1675.947 kb on - strand, within DvMF_1367 at 1676.002 kb on - strand, within DvMF_1367 at 1676.075 kb on + strand, within DvMF_1367 at 1676.129 kb on + strand, within DvMF_1367 at 1676.177 kb on + strand, within DvMF_1367 at 1676.299 kb on - strand, within DvMF_1367 at 1676.304 kb on - strand, within DvMF_1367 at 1676.332 kb on + strand, within DvMF_1367 at 1676.582 kb on - strand at 1676.685 kb on + strand at 1676.873 kb on - strand at 1676.959 kb on - strand, within DvMF_1368 at 1677.115 kb on + strand, within DvMF_1368 at 1677.562 kb on - strand at 1677.715 kb on + strand, within DvMF_1369 at 1677.738 kb on - strand, within DvMF_1369 at 1678.097 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml remove 1,675,947 - DvMF_1367 0.31 -0.5 1,676,002 - DvMF_1367 0.38 -0.3 1,676,075 + DvMF_1367 0.48 -0.1 1,676,129 + DvMF_1367 0.55 -3.3 1,676,177 + DvMF_1367 0.61 -0.1 1,676,299 - DvMF_1367 0.77 -0.4 1,676,304 - DvMF_1367 0.78 -1.4 1,676,332 + DvMF_1367 0.81 -0.3 1,676,582 - -0.6 1,676,685 + -0.6 1,676,873 - +0.1 1,676,959 - DvMF_1368 0.24 -1.5 1,677,115 + DvMF_1368 0.73 -4.4 1,677,562 - -1.5 1,677,715 + DvMF_1369 0.11 -1.0 1,677,738 - DvMF_1369 0.17 +0.1 1,678,097 + -0.6
Or see this region's nucleotide sequence