Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1276 and DvMF_1277 overlap by 1 nucleotides DvMF_1277 and DvMF_1278 overlap by 47 nucleotides DvMF_1278 and DvMF_1279 overlap by 4 nucleotides DvMF_1279 and DvMF_1280 overlap by 4 nucleotides DvMF_1280 and DvMF_1281 are separated by 24 nucleotides DvMF_1281 and DvMF_1282 are separated by 129 nucleotides
DvMF_1276: DvMF_1276 - Lytic transglycosylase catalytic (RefSeq), at 1,568,472 to 1,569,143
_1276
DvMF_1277: DvMF_1277 - hypothetical protein (RefSeq), at 1,569,143 to 1,569,562
_1277
DvMF_1278: DvMF_1278 - hypothetical protein (RefSeq), at 1,569,516 to 1,569,797
_1278
DvMF_1279: DvMF_1279 - hypothetical protein (RefSeq), at 1,569,794 to 1,570,288
_1279
DvMF_1280: DvMF_1280 - hypothetical protein (RefSeq), at 1,570,285 to 1,570,527
_1280
DvMF_1281: DvMF_1281 - hypothetical protein (RefSeq), at 1,570,552 to 1,571,151
_1281
DvMF_1282: DvMF_1282 - portal protein, putative (RefSeq), at 1,571,281 to 1,572,762
_1282
Position (kb) 1569
1570
1571 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1568.804 kb on + strand, within DvMF_1276 at 1568.976 kb on - strand, within DvMF_1276 at 1569.083 kb on + strand at 1569.260 kb on - strand, within DvMF_1277 at 1569.308 kb on + strand, within DvMF_1277 at 1569.374 kb on - strand, within DvMF_1277 at 1569.624 kb on - strand, within DvMF_1278 at 1569.643 kb on + strand, within DvMF_1278 at 1569.736 kb on + strand, within DvMF_1278 at 1569.953 kb on - strand, within DvMF_1279 at 1569.964 kb on + strand, within DvMF_1279 at 1570.535 kb on - strand at 1570.626 kb on - strand, within DvMF_1281 at 1570.747 kb on + strand, within DvMF_1281 at 1570.845 kb on + strand, within DvMF_1281 at 1571.117 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml remove 1,568,804 + DvMF_1276 0.49 -2.3 1,568,976 - DvMF_1276 0.75 -0.8 1,569,083 + -0.1 1,569,260 - DvMF_1277 0.28 -0.5 1,569,308 + DvMF_1277 0.39 -0.5 1,569,374 - DvMF_1277 0.55 -1.3 1,569,624 - DvMF_1278 0.38 -0.6 1,569,643 + DvMF_1278 0.45 -0.1 1,569,736 + DvMF_1278 0.78 -0.9 1,569,953 - DvMF_1279 0.32 -3.0 1,569,964 + DvMF_1279 0.34 -3.4 1,570,535 - -4.4 1,570,626 - DvMF_1281 0.12 -4.0 1,570,747 + DvMF_1281 0.33 -0.3 1,570,845 + DvMF_1281 0.49 -0.6 1,571,117 + -1.8
Or see this region's nucleotide sequence