Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1276

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1274 and DvMF_1275 are separated by 69 nucleotidesDvMF_1275 and DvMF_1276 overlap by 1 nucleotidesDvMF_1276 and DvMF_1277 overlap by 1 nucleotidesDvMF_1277 and DvMF_1278 overlap by 47 nucleotidesDvMF_1278 and DvMF_1279 overlap by 4 nucleotides DvMF_1274: DvMF_1274 - hypothetical protein (RefSeq), at 1,567,099 to 1,568,001 _1274 DvMF_1275: DvMF_1275 - hypothetical protein (RefSeq), at 1,568,071 to 1,568,472 _1275 DvMF_1276: DvMF_1276 - Lytic transglycosylase catalytic (RefSeq), at 1,568,472 to 1,569,143 _1276 DvMF_1277: DvMF_1277 - hypothetical protein (RefSeq), at 1,569,143 to 1,569,562 _1277 DvMF_1278: DvMF_1278 - hypothetical protein (RefSeq), at 1,569,516 to 1,569,797 _1278 DvMF_1279: DvMF_1279 - hypothetical protein (RefSeq), at 1,569,794 to 1,570,288 _1279 Position (kb) 1568 1569 1570Strain fitness (log2 ratio) -3 -2 -1 0 1at 1568.278 kb on - strand, within DvMF_1275at 1568.395 kb on + strand, within DvMF_1275at 1568.491 kb on - strandat 1568.548 kb on + strand, within DvMF_1276at 1568.563 kb on - strand, within DvMF_1276at 1568.618 kb on - strand, within DvMF_1276at 1568.804 kb on + strand, within DvMF_1276at 1568.976 kb on - strand, within DvMF_1276at 1569.083 kb on + strandat 1569.260 kb on - strand, within DvMF_1277at 1569.308 kb on + strand, within DvMF_1277at 1569.374 kb on - strand, within DvMF_1277at 1569.624 kb on - strand, within DvMF_1278at 1569.643 kb on + strand, within DvMF_1278at 1569.736 kb on + strand, within DvMF_1278at 1569.953 kb on - strand, within DvMF_1279at 1569.964 kb on + strand, within DvMF_1279

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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1,568,278 - DvMF_1275 0.51 -0.4
1,568,395 + DvMF_1275 0.81 +0.8
1,568,491 - -0.7
1,568,548 + DvMF_1276 0.11 -3.1
1,568,563 - DvMF_1276 0.14 +1.2
1,568,618 - DvMF_1276 0.22 -3.0
1,568,804 + DvMF_1276 0.49 -2.3
1,568,976 - DvMF_1276 0.75 -0.8
1,569,083 + -0.1
1,569,260 - DvMF_1277 0.28 -0.5
1,569,308 + DvMF_1277 0.39 -0.5
1,569,374 - DvMF_1277 0.55 -1.3
1,569,624 - DvMF_1278 0.38 -0.6
1,569,643 + DvMF_1278 0.45 -0.1
1,569,736 + DvMF_1278 0.78 -0.9
1,569,953 - DvMF_1279 0.32 -3.0
1,569,964 + DvMF_1279 0.34 -3.4

Or see this region's nucleotide sequence