Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1265

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1264 and DvMF_1265 overlap by 4 nucleotidesDvMF_1265 and DvMF_1266 are separated by 2 nucleotidesDvMF_1266 and DvMF_1267 are separated by 2 nucleotidesDvMF_1267 and DvMF_1268 overlap by 1 nucleotides DvMF_1264: DvMF_1264 - Transposase-like Mu (RefSeq), at 1,560,629 to 1,562,815 _1264 DvMF_1265: DvMF_1265 - bacteriophage DNA transposition B protein, putative (RefSeq), at 1,562,812 to 1,563,513 _1265 DvMF_1266: DvMF_1266 - hypothetical protein (RefSeq), at 1,563,516 to 1,564,160 _1266 DvMF_1267: DvMF_1267 - hypothetical protein (RefSeq), at 1,564,163 to 1,564,372 _1267 DvMF_1268: DvMF_1268 - Mu Gam family protein (RefSeq), at 1,564,372 to 1,564,881 _1268 Position (kb) 1562 1563 1564Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1561.882 kb on - strand, within DvMF_1264at 1561.911 kb on - strand, within DvMF_1264at 1561.982 kb on - strand, within DvMF_1264at 1562.226 kb on + strand, within DvMF_1264at 1562.233 kb on - strand, within DvMF_1264at 1562.238 kb on - strand, within DvMF_1264at 1562.302 kb on - strand, within DvMF_1264at 1562.313 kb on - strand, within DvMF_1264at 1562.517 kb on + strand, within DvMF_1264at 1562.622 kb on - strandat 1562.666 kb on + strandat 1562.666 kb on + strandat 1562.744 kb on + strandat 1562.871 kb on - strandat 1563.010 kb on - strand, within DvMF_1265at 1563.313 kb on - strand, within DvMF_1265at 1563.320 kb on - strand, within DvMF_1265at 1563.488 kb on - strandat 1563.610 kb on + strand, within DvMF_1266at 1563.618 kb on - strand, within DvMF_1266at 1563.716 kb on + strand, within DvMF_1266at 1563.724 kb on + strand, within DvMF_1266at 1563.724 kb on + strand, within DvMF_1266at 1563.724 kb on + strand, within DvMF_1266at 1563.752 kb on - strand, within DvMF_1266at 1563.907 kb on + strand, within DvMF_1266at 1563.957 kb on - strand, within DvMF_1266at 1564.077 kb on - strand, within DvMF_1266at 1564.128 kb on - strandat 1564.185 kb on - strand, within DvMF_1267at 1564.380 kb on + strandat 1564.388 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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1,561,882 - DvMF_1264 0.57 -0.1
1,561,911 - DvMF_1264 0.59 -0.5
1,561,982 - DvMF_1264 0.62 -2.1
1,562,226 + DvMF_1264 0.73 -0.8
1,562,233 - DvMF_1264 0.73 -0.4
1,562,238 - DvMF_1264 0.74 -0.2
1,562,302 - DvMF_1264 0.76 -1.0
1,562,313 - DvMF_1264 0.77 -2.8
1,562,517 + DvMF_1264 0.86 -0.6
1,562,622 - -0.7
1,562,666 + -2.7
1,562,666 + -0.6
1,562,744 + -0.2
1,562,871 - -1.0
1,563,010 - DvMF_1265 0.28 -1.8
1,563,313 - DvMF_1265 0.71 -5.1
1,563,320 - DvMF_1265 0.72 -1.3
1,563,488 - -0.8
1,563,610 + DvMF_1266 0.15 -0.3
1,563,618 - DvMF_1266 0.16 -0.9
1,563,716 + DvMF_1266 0.31 +0.5
1,563,724 + DvMF_1266 0.32 -1.1
1,563,724 + DvMF_1266 0.32 +1.2
1,563,724 + DvMF_1266 0.32 +0.2
1,563,752 - DvMF_1266 0.37 -0.9
1,563,907 + DvMF_1266 0.61 -1.7
1,563,957 - DvMF_1266 0.68 -1.1
1,564,077 - DvMF_1266 0.87 -0.7
1,564,128 - +0.3
1,564,185 - DvMF_1267 0.10 -0.2
1,564,380 + +0.9
1,564,388 - -1.0

Or see this region's nucleotide sequence