Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1219

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1217 and DvMF_1218 are separated by 74 nucleotidesDvMF_1218 and DvMF_1219 are separated by 603 nucleotidesDvMF_1219 and DvMF_1220 are separated by 122 nucleotides DvMF_1217: DvMF_1217 - formate dehydrogenase, alpha subunit (RefSeq), at 1,498,036 to 1,501,062 _1217 DvMF_1218: DvMF_1218 - hypothetical protein (RefSeq), at 1,501,137 to 1,501,373 _1218 DvMF_1219: DvMF_1219 - transposase, putative (RefSeq), at 1,501,977 to 1,502,900 _1219 DvMF_1220: DvMF_1220 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 1,503,023 to 1,503,805 _1220 Position (kb) 1501 1502 1503Strain fitness (log2 ratio) -2 -1 0 1at 1501.534 kb on - strandat 1501.725 kb on - strandat 1501.853 kb on + strandat 1501.853 kb on + strandat 1502.790 kb on - strand, within DvMF_1219at 1502.841 kb on + strandat 1502.921 kb on - strandat 1503.002 kb on - strandat 1503.109 kb on + strand, within DvMF_1220at 1503.136 kb on + strand, within DvMF_1220at 1503.207 kb on + strand, within DvMF_1220at 1503.406 kb on - strand, within DvMF_1220at 1503.485 kb on - strand, within DvMF_1220at 1503.623 kb on - strand, within DvMF_1220at 1503.813 kb on + strandat 1503.813 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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1,501,534 - -0.6
1,501,725 - +0.1
1,501,853 + +0.4
1,501,853 + -1.3
1,502,790 - DvMF_1219 0.88 -1.3
1,502,841 + -1.1
1,502,921 - -1.1
1,503,002 - -0.4
1,503,109 + DvMF_1220 0.11 -1.4
1,503,136 + DvMF_1220 0.14 -1.2
1,503,207 + DvMF_1220 0.23 -1.8
1,503,406 - DvMF_1220 0.49 -1.2
1,503,485 - DvMF_1220 0.59 -1.1
1,503,623 - DvMF_1220 0.77 +0.0
1,503,813 + +1.5
1,503,813 + -1.8

Or see this region's nucleotide sequence