Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1213

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1212 and DvMF_1213 overlap by 4 nucleotidesDvMF_1213 and DvMF_1214 are separated by 287 nucleotides DvMF_1212: DvMF_1212 - hypothetical protein (RefSeq), at 1,491,425 to 1,491,820 _1212 DvMF_1213: DvMF_1213 - sigma54 specific transcriptional regulator, Fis family (RefSeq), at 1,491,817 to 1,493,421 _1213 DvMF_1214: DvMF_1214 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,493,709 to 1,495,361 _1214 Position (kb) 1491 1492 1493 1494Strain fitness (log2 ratio) -3 -2 -1 0 1at 1490.937 kb on + strandat 1491.182 kb on + strandat 1491.389 kb on - strandat 1491.902 kb on + strandat 1491.923 kb on + strandat 1492.001 kb on + strand, within DvMF_1213at 1492.067 kb on - strand, within DvMF_1213at 1492.155 kb on + strand, within DvMF_1213at 1492.354 kb on + strand, within DvMF_1213at 1492.479 kb on - strand, within DvMF_1213at 1492.479 kb on - strand, within DvMF_1213at 1492.482 kb on - strand, within DvMF_1213at 1492.655 kb on - strand, within DvMF_1213at 1492.870 kb on + strand, within DvMF_1213at 1492.870 kb on + strand, within DvMF_1213at 1492.989 kb on - strand, within DvMF_1213at 1493.078 kb on - strand, within DvMF_1213at 1493.393 kb on + strandat 1493.406 kb on - strandat 1493.820 kb on - strandat 1494.007 kb on + strand, within DvMF_1214at 1494.077 kb on + strand, within DvMF_1214at 1494.127 kb on - strand, within DvMF_1214

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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1,490,937 + -0.8
1,491,182 + -0.2
1,491,389 - -0.8
1,491,902 + +0.0
1,491,923 + -0.7
1,492,001 + DvMF_1213 0.11 +0.8
1,492,067 - DvMF_1213 0.16 -0.7
1,492,155 + DvMF_1213 0.21 -0.7
1,492,354 + DvMF_1213 0.33 -1.0
1,492,479 - DvMF_1213 0.41 -0.6
1,492,479 - DvMF_1213 0.41 -0.6
1,492,482 - DvMF_1213 0.41 +0.2
1,492,655 - DvMF_1213 0.52 -0.4
1,492,870 + DvMF_1213 0.66 -1.2
1,492,870 + DvMF_1213 0.66 -0.5
1,492,989 - DvMF_1213 0.73 -0.9
1,493,078 - DvMF_1213 0.79 -1.8
1,493,393 + -1.5
1,493,406 - +0.1
1,493,820 - +0.4
1,494,007 + DvMF_1214 0.18 -1.0
1,494,077 + DvMF_1214 0.22 -1.0
1,494,127 - DvMF_1214 0.25 -2.8

Or see this region's nucleotide sequence