Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1178

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1177 and DvMF_1178 are separated by 262 nucleotidesDvMF_1178 and DvMF_1179 overlap by 17 nucleotides DvMF_1177: DvMF_1177 - precorrin-4 C11-methyltransferase (RefSeq), at 1,454,396 to 1,455,313 _1177 DvMF_1178: DvMF_1178 - multicopper oxidase type 3 (RefSeq), at 1,455,576 to 1,457,303 _1178 DvMF_1179: DvMF_1179 - extracellular solute-binding protein family 3 (RefSeq), at 1,457,287 to 1,458,444 _1179 Position (kb) 1455 1456 1457 1458Strain fitness (log2 ratio) -3 -2 -1 0 1at 1454.591 kb on - strand, within DvMF_1177at 1454.617 kb on - strand, within DvMF_1177at 1454.964 kb on + strand, within DvMF_1177at 1455.271 kb on + strandat 1455.398 kb on - strandat 1455.516 kb on + strandat 1456.297 kb on + strand, within DvMF_1178at 1456.506 kb on - strand, within DvMF_1178at 1456.511 kb on - strand, within DvMF_1178at 1456.682 kb on + strand, within DvMF_1178at 1457.359 kb on - strandat 1457.374 kb on + strandat 1457.388 kb on - strandat 1457.388 kb on - strandat 1457.743 kb on - strand, within DvMF_1179at 1457.762 kb on - strand, within DvMF_1179at 1457.799 kb on - strand, within DvMF_1179at 1457.889 kb on + strand, within DvMF_1179at 1458.104 kb on + strand, within DvMF_1179at 1458.265 kb on + strand, within DvMF_1179

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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1,454,591 - DvMF_1177 0.21 -0.9
1,454,617 - DvMF_1177 0.24 -2.1
1,454,964 + DvMF_1177 0.62 -0.1
1,455,271 + -3.5
1,455,398 - -0.5
1,455,516 + -0.7
1,456,297 + DvMF_1178 0.42 -3.2
1,456,506 - DvMF_1178 0.54 -2.0
1,456,511 - DvMF_1178 0.54 -2.0
1,456,682 + DvMF_1178 0.64 -1.5
1,457,359 - -0.4
1,457,374 + -0.7
1,457,388 - -1.0
1,457,388 - -3.0
1,457,743 - DvMF_1179 0.39 -1.5
1,457,762 - DvMF_1179 0.41 -1.5
1,457,799 - DvMF_1179 0.44 -0.3
1,457,889 + DvMF_1179 0.52 -1.0
1,458,104 + DvMF_1179 0.71 -0.4
1,458,265 + DvMF_1179 0.84 -0.9

Or see this region's nucleotide sequence