Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1131

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1130 and DvMF_1131 are separated by 404 nucleotidesDvMF_1131 and DvMF_1132 overlap by 11 nucleotides DvMF_1130: DvMF_1130 - hypothetical protein (RefSeq), at 1,386,837 to 1,387,103 _1130 DvMF_1131: DvMF_1131 - response regulator receiver sensor signal transduction histidine kinase (RefSeq), at 1,387,508 to 1,389,010 _1131 DvMF_1132: DvMF_1132 - pseudouridine synthase (RefSeq), at 1,389,000 to 1,390,391 _1132 Position (kb) 1387 1388 1389 1390Strain fitness (log2 ratio) -2 -1 0 1at 1386.546 kb on - strandat 1386.580 kb on - strandat 1386.772 kb on - strandat 1386.952 kb on - strand, within DvMF_1130at 1387.175 kb on - strandat 1387.359 kb on - strandat 1387.367 kb on - strandat 1387.650 kb on + strandat 1387.685 kb on - strand, within DvMF_1131at 1387.790 kb on - strand, within DvMF_1131at 1387.891 kb on - strand, within DvMF_1131at 1388.069 kb on - strand, within DvMF_1131at 1388.320 kb on + strand, within DvMF_1131at 1388.692 kb on - strand, within DvMF_1131at 1388.825 kb on - strand, within DvMF_1131at 1388.960 kb on - strandat 1389.004 kb on + strandat 1389.136 kb on - strandat 1389.175 kb on + strand, within DvMF_1132at 1389.464 kb on + strand, within DvMF_1132at 1389.464 kb on + strand, within DvMF_1132at 1389.517 kb on + strand, within DvMF_1132at 1389.551 kb on + strand, within DvMF_1132at 1389.886 kb on + strand, within DvMF_1132

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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1,386,546 - -1.1
1,386,580 - -1.5
1,386,772 - +0.3
1,386,952 - DvMF_1130 0.43 +0.1
1,387,175 - +0.5
1,387,359 - -0.6
1,387,367 - -0.8
1,387,650 + -0.4
1,387,685 - DvMF_1131 0.12 +0.1
1,387,790 - DvMF_1131 0.19 +0.1
1,387,891 - DvMF_1131 0.25 -1.7
1,388,069 - DvMF_1131 0.37 -0.1
1,388,320 + DvMF_1131 0.54 -0.4
1,388,692 - DvMF_1131 0.79 +0.3
1,388,825 - DvMF_1131 0.88 +0.7
1,388,960 - -1.9
1,389,004 + +0.9
1,389,136 - +0.2
1,389,175 + DvMF_1132 0.13 -0.4
1,389,464 + DvMF_1132 0.33 +0.6
1,389,464 + DvMF_1132 0.33 -0.5
1,389,517 + DvMF_1132 0.37 +1.4
1,389,551 + DvMF_1132 0.40 -0.9
1,389,886 + DvMF_1132 0.64 -0.4

Or see this region's nucleotide sequence