Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1054

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1053 and DvMF_1054 are separated by 167 nucleotidesDvMF_1054 and DvMF_1055 are separated by 554 nucleotides DvMF_1053: DvMF_1053 - transcriptional regulator, TetR family (RefSeq), at 1,290,225 to 1,290,806 _1053 DvMF_1054: DvMF_1054 - protein of unknown function DUF1499 (RefSeq), at 1,290,974 to 1,291,501 _1054 DvMF_1055: DvMF_1055 - Mg2 transporter protein CorA family protein (RefSeq), at 1,292,056 to 1,292,988 _1055 Position (kb) 1290 1291 1292Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1290.060 kb on + strandat 1290.113 kb on - strandat 1290.684 kb on + strand, within DvMF_1053at 1291.152 kb on + strand, within DvMF_1054at 1291.777 kb on + strandat 1291.956 kb on - strandat 1292.319 kb on + strand, within DvMF_1055at 1292.327 kb on - strand, within DvMF_1055

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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1,290,060 + -0.4
1,290,113 - -1.0
1,290,684 + DvMF_1053 0.79 -1.5
1,291,152 + DvMF_1054 0.34 -1.4
1,291,777 + +1.0
1,291,956 - +0.9
1,292,319 + DvMF_1055 0.28 -3.8
1,292,327 - DvMF_1055 0.29 -2.5

Or see this region's nucleotide sequence