Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1016

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1015 and DvMF_1016 are separated by 2 nucleotidesDvMF_1016 and DvMF_1017 are separated by 121 nucleotidesDvMF_1017 and DvMF_1018 are separated by 37 nucleotidesDvMF_1018 and DvMF_1019 are separated by 346 nucleotides DvMF_1015: DvMF_1015 - ferrous iron transport protein B (RefSeq), at 1,231,611 to 1,233,890 _1015 DvMF_1016: DvMF_1016 - FeoA family protein (RefSeq), at 1,233,893 to 1,234,150 _1016 DvMF_1017: DvMF_1017 - hypothetical protein (RefSeq), at 1,234,272 to 1,234,478 _1017 DvMF_1018: DvMF_1018 - FeoA family protein (RefSeq), at 1,234,516 to 1,234,764 _1018 DvMF_1019: DvMF_1019 - peptidase dimerisation domain protein (RefSeq), at 1,235,111 to 1,236,346 _1019 Position (kb) 1233 1234 1235Strain fitness (log2 ratio) -1 0 1at 1234.292 kb on - strandat 1234.294 kb on - strand, within DvMF_1017at 1234.423 kb on + strand, within DvMF_1017at 1234.490 kb on - strandat 1234.545 kb on - strand, within DvMF_1018at 1234.639 kb on + strand, within DvMF_1018

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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1,234,292 - -1.1
1,234,294 - DvMF_1017 0.11 -0.9
1,234,423 + DvMF_1017 0.73 -1.0
1,234,490 - +1.0
1,234,545 - DvMF_1018 0.12 -0.8
1,234,639 + DvMF_1018 0.49 -1.2

Or see this region's nucleotide sequence