Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0995

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0993 and DvMF_0994 are separated by 209 nucleotidesDvMF_0994 and DvMF_0995 are separated by 144 nucleotidesDvMF_0995 and gltX are separated by 478 nucleotides DvMF_0993: DvMF_0993 - transcriptional regulator, Crp/Fnr family (RefSeq), at 1,207,197 to 1,207,886 _0993 DvMF_0994: DvMF_0994 - hypothetical protein (RefSeq), at 1,208,096 to 1,208,602 _0994 DvMF_0995: DvMF_0995 - metal dependent phosphohydrolase (RefSeq), at 1,208,747 to 1,210,003 _0995 DvMF_0996: gltX - glutamyl-tRNA synthetase (RefSeq), at 1,210,482 to 1,211,876 gltX Position (kb) 1208 1209 1210 1211Strain fitness (log2 ratio) -2 -1 0 1at 1207.799 kb on - strand, within DvMF_0993at 1208.259 kb on + strand, within DvMF_0994at 1208.259 kb on + strand, within DvMF_0994at 1208.561 kb on + strandat 1208.729 kb on - strandat 1209.433 kb on + strand, within DvMF_0995at 1209.583 kb on + strand, within DvMF_0995at 1209.789 kb on - strand, within DvMF_0995at 1209.824 kb on - strand, within DvMF_0995at 1210.017 kb on - strandat 1210.212 kb on - strandat 1210.339 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
remove
1,207,799 - DvMF_0993 0.87 -0.4
1,208,259 + DvMF_0994 0.32 -0.0
1,208,259 + DvMF_0994 0.32 -0.6
1,208,561 + -2.0
1,208,729 - -0.5
1,209,433 + DvMF_0995 0.55 -0.4
1,209,583 + DvMF_0995 0.67 -1.4
1,209,789 - DvMF_0995 0.83 -1.6
1,209,824 - DvMF_0995 0.86 -2.0
1,210,017 - -1.2
1,210,212 - +0.7
1,210,339 - +0.1

Or see this region's nucleotide sequence