Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_R0023

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0917 and DvMF_R0023 are separated by 406 nucleotidesDvMF_R0023 and DvMF_R0024 are separated by 105 nucleotides DvMF_0917: DvMF_0917 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 1,102,353 to 1,104,161 _0917 DvMF_R0023: DvMF_R0023 - 5S ribosomal RNA (RefSeq), at 1,104,568 to 1,104,682 _R0023 DvMF_R0024: DvMF_R0024 - 23S ribosomal RNA (RefSeq), at 1,104,788 to 1,107,713 _R0024 Position (kb) 1104 1105Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1103.612 kb on + strand, within DvMF_0917at 1103.766 kb on + strand, within DvMF_0917at 1103.783 kb on + strand, within DvMF_0917at 1103.879 kb on - strand, within DvMF_0917at 1103.977 kb on - strand, within DvMF_0917at 1103.979 kb on - strand, within DvMF_0917at 1104.328 kb on + strandat 1104.389 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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1,103,612 + DvMF_0917 0.70 -0.7
1,103,766 + DvMF_0917 0.78 -0.5
1,103,783 + DvMF_0917 0.79 -0.5
1,103,879 - DvMF_0917 0.84 -1.4
1,103,977 - DvMF_0917 0.90 -0.5
1,103,979 - DvMF_0917 0.90 +0.4
1,104,328 + -4.2
1,104,389 - -2.7

Or see this region's nucleotide sequence