Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0899

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0898 and DvMF_0899 overlap by 23 nucleotidesDvMF_0899 and DvMF_0900 are separated by 139 nucleotides DvMF_0898: DvMF_0898 - pyridine nucleotide-disulphide oxidoreductase dimerisation region (RefSeq), at 1,082,059 to 1,083,585 _0898 DvMF_0899: DvMF_0899 - SNARE associated Golgi protein (RefSeq), at 1,083,563 to 1,084,339 _0899 DvMF_0900: DvMF_0900 - Glucokinase (RefSeq), at 1,084,479 to 1,085,576 _0900 Position (kb) 1083 1084 1085Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1082.722 kb on + strand, within DvMF_0898at 1082.812 kb on - strand, within DvMF_0898at 1082.968 kb on + strand, within DvMF_0898at 1083.100 kb on + strand, within DvMF_0898at 1083.246 kb on + strand, within DvMF_0898at 1083.292 kb on + strand, within DvMF_0898at 1083.433 kb on + strandat 1083.462 kb on - strandat 1083.665 kb on + strand, within DvMF_0899at 1083.930 kb on + strand, within DvMF_0899at 1084.038 kb on + strand, within DvMF_0899at 1084.040 kb on + strand, within DvMF_0899at 1084.046 kb on - strand, within DvMF_0899at 1084.100 kb on + strand, within DvMF_0899at 1084.100 kb on + strand, within DvMF_0899at 1084.108 kb on - strand, within DvMF_0899at 1084.108 kb on - strand, within DvMF_0899at 1084.172 kb on - strand, within DvMF_0899at 1084.174 kb on + strand, within DvMF_0899at 1084.182 kb on - strand, within DvMF_0899at 1084.226 kb on - strand, within DvMF_0899at 1084.330 kb on - strandat 1084.394 kb on + strandat 1084.418 kb on - strandat 1084.864 kb on - strand, within DvMF_0900at 1084.879 kb on - strand, within DvMF_0900at 1085.212 kb on + strand, within DvMF_0900at 1085.220 kb on - strand, within DvMF_0900

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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1,082,722 + DvMF_0898 0.43 -0.3
1,082,812 - DvMF_0898 0.49 -1.8
1,082,968 + DvMF_0898 0.60 -0.8
1,083,100 + DvMF_0898 0.68 -0.4
1,083,246 + DvMF_0898 0.78 -1.0
1,083,292 + DvMF_0898 0.81 +0.1
1,083,433 + -0.7
1,083,462 - -1.0
1,083,665 + DvMF_0899 0.13 -3.2
1,083,930 + DvMF_0899 0.47 -1.5
1,084,038 + DvMF_0899 0.61 -0.9
1,084,040 + DvMF_0899 0.61 -0.3
1,084,046 - DvMF_0899 0.62 -0.6
1,084,100 + DvMF_0899 0.69 -1.2
1,084,100 + DvMF_0899 0.69 +1.1
1,084,108 - DvMF_0899 0.70 -0.9
1,084,108 - DvMF_0899 0.70 -0.1
1,084,172 - DvMF_0899 0.78 -0.8
1,084,174 + DvMF_0899 0.79 -0.8
1,084,182 - DvMF_0899 0.80 -0.1
1,084,226 - DvMF_0899 0.85 -4.6
1,084,330 - -1.0
1,084,394 + -0.4
1,084,418 - -0.6
1,084,864 - DvMF_0900 0.35 -0.3
1,084,879 - DvMF_0900 0.36 -3.5
1,085,212 + DvMF_0900 0.67 +0.6
1,085,220 - DvMF_0900 0.67 -0.5

Or see this region's nucleotide sequence